PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc02557.1.g00120.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

ERF

Protein Properties

Length: 155aa MW: 16488.4 Da PI: 6.5369

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc02557.1.g00120.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	51.7	2.2e-16	19	67	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 y+G+r +++g+Wv+eIr+p r +r++lg+f tae+Aa a++ a+ +l+g Zmw_sc02557.1.g00120.1.am.mk 19 FYRGIR--SRSGKWVSEIREP-----RkvRRIWLGTFPTAEMAAVAYDVAASALRG 67 69*6..678*****8.....337***********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF54171	4.38E-18	19	76	IPR016177	DNA-binding domain
PROSITE profile	PS51032	20.192	19	75	IPR001471	AP2/ERF domain
SMART	SM00380	2.6E-28	19	81	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	2.0E-27	20	76	IPR001471	AP2/ERF domain
Pfam	PF00847	1.4E-8	20	67	IPR001471	AP2/ERF domain
CDD	cd00018	7.38E-28	20	77	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 155 aa Download sequence Send to blast
MSAHGGGPSS PRSTGKHPFY RGIRSRSGKW VSEIREPRKV RRIWLGTFPT AEMAAVAYDV 60 AASALRGPDA ALNFPDLAAA RPAPAAAAAA AQPEGGSSAP NPYFLDEEAL FETPQFLRNM 120 AAGMMMSPPR ISPNSSDDSP DPSEAGESLW SYRDP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	8e-14	16	75	11	72	Ethylene-responsive transcription factor ERF096
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Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004976542.1	3e-78	ethylene-responsive transcription factor ERF025
Swissprot	Q9FJ90	1e-38	ERF25_ARATH; Ethylene-responsive transcription factor ERF025
TrEMBL	A0A0A9B4N5	5e-81	A0A0A9B4N5_ARUDO; Uncharacterized protein
STRING	Si011086m	1e-77	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3654	27	62

Publications ? help Back to Top
Li B, et al. Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis. Plant Cell, 2018. 30(1): p. 178-195 [PMID:29317470]