PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc02562.1.g00090.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB_related
Protein Properties Length: 313aa    MW: 34307.6 Da    PI: 10.5755
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc02562.1.g00090.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.22.4e-15239286148
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                   rg+WT+eEd +l++ +   G  +W+++++  g+ R++k+c++rw +yl
  Zmw_sc02562.1.g00090.1.am.mk 239 RGPWTAEEDRKLINFILTNGHCCWRAVPKLAGLLRCGKSCRLRWTNYL 286
                                   89******************************99************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.4E-21230288IPR009057Homeodomain-like
PROSITE profilePS5129419.461234290IPR017930Myb domain
SMARTSM007172.3E-12238288IPR001005SANT/Myb domain
PfamPF002494.2E-14239286IPR001005SANT/Myb domain
SuperFamilySSF466892.53E-18240313IPR009057Homeodomain-like
CDDcd001675.26E-10241286No hitNo description
Gene3DG3DSA:1.10.10.603.7E-5289313IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MRNFAVAARV SKIETTEIEL LKRSVQHTLG GIAVVRHERQ IVVAAVSGPA QRMDRSSPCF  60
FTSSFTAIAQ IHAQSPVGDE AKYQGHANVW PMILRWSAAE VSPSMHWRME PAGAALSQDA  120
TEVDMACPAL APWETEVTAK PPQGTPNCSF RSCMVGRARR YGARLAQSSK PRARAGLVPA  180
LLACPRAAAF LTGARRALAG RCCSRLHAWP AGTRSSSSTH RGGFGMGRQP CCDKLEVKRG  240
PWTAEEDRKL INFILTNGHC CWRAVPKLAG LLRCGKSCRL RWTNYLRPDL KRGLLTEAEE  300
QVVTDLHAKL GNR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A2e-13236313177MYB PROTO-ONCOGENE PROTEIN
1h8a_C2e-1323631324100MYB TRANSFORMING PROTEIN
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP6544622