PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc02589.1.g00030.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ARF
Protein Properties Length: 517aa    MW: 57120.7 Da    PI: 5.3652
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc02589.1.g00030.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B371.79.5e-23134233399
                                   EE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--T CS
                            B3   3 kvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLke 76 
                                   k lt+sd+++ g +++p+ +a+ +       ++++   +tl ++d+ g+ W++++iyr++++r++lt+GW++Fv+a+ L +
  Zmw_sc02589.1.g00030.1.am.mk 134 KLLTQSDANNGGGFSVPRYCADLIfpklnfdDEPPV--QTLLVRDLAGNPWQFRHIYRGTPRRHLLTTGWSKFVNAKLLVA 212
                                   789****************99888*****8544444..49***************************************** PP

                                   T-EEEEEE-SSSEE..EEEEE-S CS
                            B3  77 gDfvvFkldgrsefelvvkvfrk 99 
                                   gD++vF+  +r ++el+v+++r+
  Zmw_sc02589.1.g00030.1.am.mk 213 GDTIVFM--RRPDGELLVGMRRA 233
                                   *******..679********997 PP
2Auxin_resp584.2e-20261330168
                    Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkma.fetedsserrl.sGtvvgvsd 68 
                                   aa+ a+++++F+v+Y+Pr ++ eFvv++++ve+al++ + +Gm+++m+ +e+ed++++ +  Gtv  +++
  Zmw_sc02589.1.g00030.1.am.mk 261 AARLATEGKPFTVTYYPRLGAGEFVVPRQEVEDALTIDWEPGMQVRMQaMEGEDARRIIWaNGTVKELRA 330
                                   6788999****************************************659**********9****98765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.8E-33124234IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.79E-27127235IPR015300DNA-binding pseudobarrel domain
CDDcd100173.46E-19130232No hitNo description
PROSITE profilePS5086312.717132234IPR003340B3 DNA binding domain
SMARTSM010193.4E-15132234IPR003340B3 DNA binding domain
PfamPF023626.7E-20134233IPR003340B3 DNA binding domain
PfamPF065074.8E-16261333IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 517 aa     Download sequence    Send to blast
MEEEKRRPHV ARLDPWRRSA CCCCIRDPNA TEQELQEQHT DVWLACAVPM SRLPAIGSEV  60
YYFPHGHAEQ CPEPLPSTLP RPHIFPCTVT ALRLAADTKT DEVMAHISLQ PGPHGSYSAP  120
ASAAADPAFR FYGKLLTQSD ANNGGGFSVP RYCADLIFPK LNFDDEPPVQ TLLVRDLAGN  180
PWQFRHIYRG TPRRHLLTTG WSKFVNAKLL VAGDTIVFMR RPDGELLVGM RRAPRFPFVR  240
EGPGRDIDTR ARVPPERVIE AARLATEGKP FTVTYYPRLG AGEFVVPRQE VEDALTIDWE  300
PGMQVRMQAM EGEDARRIIW ANGTVKELRA QMWRPLEVEW DDSSSSMKRR HLNAWQLQFV  360
GCAPLFKRLR SHDTLLDSGV DSTMVAPLLL TKEMGLLPTP PPPAAAAGMQ EARHNGPTDH  420
PSSARITAQL LFPSPVEDLS GASEILDPEL GSPPSNSATD MAPSTDLPAV ETRKSIQLFG  480
VTITPHALPS AADASSEEVN NEVADDSVVD ENAEQDA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldy_A2e-554135822353Auxin response factor 1
4ldy_B2e-554135822353Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025825005.10.0auxin response factor 13-like
SwissprotQ7XSS91e-143ARFM_ORYSJ; Auxin response factor 13
TrEMBLA0A2T7D2930.0A0A2T7D293_9POAL; Auxin response factor
STRINGSi021833m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP113553137
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]