PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc02600.1.g00080.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family WRKY
Protein Properties Length: 348aa    MW: 36359.7 Da    PI: 6.1809
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc02600.1.g00080.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY83.91.6e-26168226259
                                   --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                          WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                                   +D ++WrKYGqK++kgs++pr+YY+C+s  gC+++k vers   p v+++tY  eH h+
  Zmw_sc02600.1.g00080.1.am.mk 168 SDPWAWRKYGQKPIKGSPYPRGYYKCSSMkGCMARKLVERSPAKPGVLIVTYMAEHCHP 226
                                   799***********************9988***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1182903.27E-24166228IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.6E-26167228IPR003657WRKY domain
SMARTSM007743.6E-31167227IPR003657WRKY domain
PROSITE profilePS5081129.126168228IPR003657WRKY domain
PfamPF031062.1E-22169226IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MESFNDWDLQ AVVRSCSFAH AEEPAGAPGA AAAPVRDVAA AQERRAPVVR AAAPVPVPGR  60
ASAAAGVVVK QEASSSRMHG LEYLDLDHKP FLLPPSATTA AASRAGDDVR EVMISFPAAS  120
TSGAQSRAVP PGRNKAGPRT PRPKRSKKSQ LKKVVREMPV ADGGVSASDP WAWRKYGQKP  180
IKGSPYPRGY YKCSSMKGCM ARKLVERSPA KPGVLIVTYM AEHCHPVPTQ LNALAGTTRH  240
TKSASAATAA EDRPAASSPK SHEQQGPVSD EAARCDAADS NEASTAPVAA VECGGTEEAA  300
AALADDDGEF LPAGMDLDEL LATVDDDFDF EPVPDDDDGG ALGRRLSL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B4e-18148229280Disease resistance protein RRS1
5w3x_D4e-18148229280Disease resistance protein RRS1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004969219.11e-119probable WRKY transcription factor 65
TrEMBLA0A1E5UWP31e-123A0A1E5UWP3_9POAL; WRKY transcription factor 22
STRINGSi001863m1e-118(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42793070