PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc02601.1.g00030.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

M-type_MADS

Protein Properties

Length: 431aa MW: 47704.9 Da PI: 4.723

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc02601.1.g00030.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	40.5	3.6e-13	11	59	1	49
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 k+i+n++ r+ t+ kRr g+ K LS+L++a++av++ +++gk++ + Zmw_sc02601.1.g00030.1.am.mk 11 KFIQNDRDRSLTYFKRRSGLYKSITDLSTLTGAKAAVVVEGESGKIFSF 59 79*******************************************9988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	8.6E-12	1	62	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	16.666	3	63	IPR002100	Transcription factor, MADS-box
CDD	cd00266	3.69E-17	5	76	No hit	No description
PRINTS	PR00404	1.2E-8	5	25	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	6.28E-17	8	77	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.7E-15	12	59	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.2E-8	25	40	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.2E-8	40	61	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 431 aa Download sequence Send to blast
MNRRPRRSGI KFIQNDRDRS LTYFKRRSGL YKSITDLSTL TGAKAAVVVE GESGKIFSFG 60 SPSANAVVEC FLSNSSPANI YVDEAEMARI TYLQDELFHV EKEKTVEEKR VKESKARVKK 120 IEETSRVGKL LFQDVEKLGA GELSELLQHL ARVQEDIDAR VYADQQVEVS GQQGDPSLPA 180 FSSSSWLPQI NMPPRHLPWV PLHASSSLHP QSPWGPFLHS SMSYSSLLPP AHIPPPAHTP 240 AIHHQAPIMP LPPTSEAHQY GYYFPQEQPL PQADLDPNYA YAPNVNYFDP VVPLDQNPSA 300 YIQNFNFNPV PPLDQNPAAY ACNFYFDPVL PPQTDQQAIS QNFAADGQPP DGVQWTPTSP 360 GNEYYNYQTL YVQMGLTDDN GVQAAAAGGD QEHVPVPSDG LHQEDDDGSL TMNLWDYSPF 420 RGENPGGGAG N

Sequence ? help Back to Top

Protein Sequence Length: 431 aa Download sequence Send to blast

MNRRPRRSGI KFIQNDRDRS LTYFKRRSGL YKSITDLSTL TGAKAAVVVE GESGKIFSFG  60
SPSANAVVEC FLSNSSPANI YVDEAEMARI TYLQDELFHV EKEKTVEEKR VKESKARVKK  120
IEETSRVGKL LFQDVEKLGA GELSELLQHL ARVQEDIDAR VYADQQVEVS GQQGDPSLPA  180
FSSSSWLPQI NMPPRHLPWV PLHASSSLHP QSPWGPFLHS SMSYSSLLPP AHIPPPAHTP  240
AIHHQAPIMP LPPTSEAHQY GYYFPQEQPL PQADLDPNYA YAPNVNYFDP VVPLDQNPSA  300
YIQNFNFNPV PPLDQNPAAY ACNFYFDPVL PPQTDQQAIS QNFAADGQPP DGVQWTPTSP  360
GNEYYNYQTL YVQMGLTDDN GVQAAAAGGD QEHVPVPSDG LHQEDDDGSL TMNLWDYSPF  420
RGENPGGGAG N

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3089	22	76