PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc02615.1.g00030.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C2H2
Protein Properties Length: 430aa    MW: 46769.7 Da    PI: 9.8812
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc02615.1.g00030.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.60.00043134154323
                                   ETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                                   C++C+ksF++  +L  H+ +H
  Zmw_sc02615.1.g00030.1.am.mk 134 CKYCKKSFPSGRSLGGHMAMH 154
                                   ******************999 PP
2zf-C2H216.91.7e-05206227223
                                   EETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                                   +C+ C k+F +++ L  H+r+H
  Zmw_sc02615.1.g00030.1.am.mk 206 ECQLCFKVFASSDALSIHMRVH 227
                                   6*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003552.7132154IPR015880Zinc finger, C2H2-like
PfamPF139123.3E-8132156IPR007087Zinc finger, C2H2
SuperFamilySSF576673.0E-7132154No hitNo description
PROSITE patternPS000280134154IPR007087Zinc finger, C2H2
SuperFamilySSF576673.0E-7200227No hitNo description
SMARTSM003550.016205227IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.281205232IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.2E-5206229IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF138940.0013206227No hitNo description
PROSITE patternPS000280207229IPR007087Zinc finger, C2H2
SMARTSM003550.23344366IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.868344366IPR007087Zinc finger, C2H2
PfamPF139123.9E-7344366IPR007087Zinc finger, C2H2
PROSITE patternPS000280346366IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 430 aa     Download sequence    Send to blast
MSEFWRHRSA APFLVGTTTA VRSSANASRP TARPSRKPGC RQLPSTAPPF QIPKAWLFPS  60
KSGKEHPPTS AARCNGRKAA AAAAAAAALG RLLLPAAARN PSGFRWVLQS PSTGQDSGTE  120
VSGGMPPRGM KHWCKYCKKS FPSGRSLGGH MAMHRKRLKK QPSSTPALSS ADGGACRYGL  180
REKRHKTRLM CDSSDDEYLT LLPKTECQLC FKVFASSDAL SIHMRVHTHH QQTMVANKVE  240
ESTEGKGCGL RDFTVSTPVV LTYGDQEVGA ARILLMLSRH SDMCSASVER CNDDYERDSN  300
SVYHVQQSES QSGDDEPMKP ENCSSDGRMK FSSSSNVLKA TSIHKCKLCS RVFTSGNALG  360
GHQKFHKFHG HRKVQSTPNS AVAETGHLVE EDNRSLSLNP SSSSSDRNYS GTIGKSELNL  420
WLDASSILSE
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025796823.14e-99uncharacterized protein LOC112876858
RefseqXP_025796824.14e-99uncharacterized protein LOC112876858
TrEMBLA0A3L6S7666e-98A0A3L6S766_PANMI; Uncharacterized protein
STRINGPavir.Ib03920.1.p1e-102(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP143671921