PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc02654.1.g00130.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family FAR1
Protein Properties Length: 222aa    MW: 25177.6 Da    PI: 9.4644
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc02654.1.g00130.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR136.12.2e-1147130190
                          FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtk 80 
                                   +fY++Y + +GF++rk++s++    g    +++ Cs +g+++++ +   +++r ++++r  Cka++    +    + + ++
  Zmw_sc02654.1.g00130.1.sm.mk  47 NFYKTYLELTGFNIRKNRSRNG---G--HGQDYECSSSGNHSKSPSV--NRKRGKTTNRKRCKAMVCAVTSFdGTTVYFKS 120
                                   6***************987766...3..568*********9998876..889999999*******9866666588999*** PP

                          FAR1  81 leleHnHela 90 
                                   ++le nHel+
  Zmw_sc02654.1.g00130.1.sm.mk 121 IVLENNHELT 130
                                   ********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031017.1E-847130IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MTPPVSIPLE NVVTPEEEPV FMHDKRIDPK FILSLDLCFL SMDDSFNFYK TYLELTGFNI  60
RKNRSRNGGH GQDYECSSSG NHSKSPSVNR KRGKTTNRKR CKAMVCAVTS FDGTTVYFKS  120
IVLENNHELT RTPTMTKQMR AHELKEGPID DMIDVLHRAK VKLVNVMNVL RESVGGSENL  180
SMSERDIQNR SRSSLKTGRG GGTVGTRTSQ WLSHCEQQLQ NY