PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc02660.1.g00050.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

C2H2

Protein Properties

Length: 207aa MW: 21909.7 Da PI: 9.4092

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc02660.1.g00050.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.9	8e-05	88	110	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C +C+++F+++ L H++ H Zmw_sc02660.1.g00050.1.am.mk 88 FACCYCPRTFRNSQALGGHQNAH 110 78******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	5.59E-5	87	115	No hit	No description
PROSITE profile	PS50157	10.596	88	115	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	90	110	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 207 aa Download sequence Send to blast
MIPLASAVDL YSEFSSRTHD IMAPGRAPPS SSRKPTHLAP GHLLRASSWV LGSGVPGMEM 60 VDRDGDGLDL SLSLRCSRSS PPRFQAVFAC CYCPRTFRNS QALGGHQNAH KRQRNLARRG 120 HRAPVAAAVA DQGGNNNKAA GSASAPHSAA EFVVVDAWGE GRDLHRHLHH VTAVGGASAS 180 SAGANGAGQF KMVEEVKEEM IDLSLKL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001169428.1	1e-39	uncharacterized protein LOC100383297
TrEMBL	A0A3L6G4H6	3e-38	A0A3L6G4H6_MAIZE; Zinc finger protein 2
TrEMBL	C0PEV7	3e-38	C0PEV7_MAIZE; C2H2 zinc finger malformed spikelet
STRING	GRMZM2G074793_P01	6e-39	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6992	26	46