PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc02673.1.g00020.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family WRKY
Protein Properties Length: 209aa    MW: 22692.8 Da    PI: 5.0877
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc02673.1.g00020.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.14.9e-30111169159
                                   ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                          WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                                   ldDg++WrKYG+K vk++++pr+YYrC+  gC vkk+ver+++dp+++++tY g Hnh+
  Zmw_sc02673.1.g00020.1.sm.mk 111 LDDGFKWRKYGKKAVKNNPNPRNYYRCSEDGCGVKKRVERDRDDPRYIITTYDGVHNHT 169
                                   59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.5E-3299171IPR003657WRKY domain
SuperFamilySSF1182901.83E-27103171IPR003657WRKY domain
PROSITE profilePS5081131.525106171IPR003657WRKY domain
SMARTSM007744.7E-34111170IPR003657WRKY domain
PfamPF031063.3E-24112168IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MAASLGLNPE AAFFNPCSAY SASSPFMTTA DFAASFPASE LDDAAARAFF AELDDDCRLF  60
DFGYSPAASV FADDGDGDDH NEKKMRYADD EKGPRVNGRI GFRTRSEVEI LDDGFKWRKY  120
GKKAVKNNPN PRNYYRCSED GCGVKKRVER DRDDPRYIIT TYDGVHNHTS PAAAVVQYSG  180
GAGAPSFYSP PHSGSPAAAA SYSSGSLLF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-2897172378Probable WRKY transcription factor 4
2lex_A1e-2897172378Probable WRKY transcription factor 4
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002440727.16e-79probable WRKY transcription factor 50
TrEMBLA0A1E5VP707e-78A0A1E5VP70_9POAL; Putative WRKY transcription factor 50
STRINGSb09g005700.12e-78(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44137206