PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc02674.1.g00050.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family HD-ZIP
Protein Properties Length: 237aa    MW: 26410.7 Da    PI: 6.3054
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc02674.1.g00050.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox597.9e-1961114356
                                     --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                        Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                                     k++++++eq + Le  F+k+r++ + ++ +LA++lgL+ +qV vWFqNrRa++k
  Zmw_sc02674.1.g00050.1.sm.mkhc  61 KKRRLSDEQARLLEMSFRKERKLETPRKVQLAAELGLDAKQVAVWFQNRRARHK 114
                                     56689***********************************************99 PP
2HD-ZIP_I/II111.94.2e-3661152293
                     HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerL 80 
                                     kkrrls+eq++lLE+sF++e+kLe+ rKv+la eLgl+++qvavWFqnrRAR+k+k +E+++++L++a+da++ +n++L
  Zmw_sc02674.1.g00050.1.sm.mkhc  61 KKRRLSDEQARLLEMSFRKERKLETPRKVQLAAELGLDAKQVAVWFQNRRARHKSKLMEEEFAKLRAAHDAVVLRNCHL 139
                                     9****************************************************************************** PP

                     HD-ZIP_I/II  81 ekeveeLreelke 93 
                                     ++e+ +L+++l+e
  Zmw_sc02674.1.g00050.1.sm.mkhc 140 QTEMLKLEDRLAE 152
                                     ********99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007116.90856116IPR001356Homeobox domain
SMARTSM003894.6E-1659120IPR001356Homeobox domain
SuperFamilySSF466891.37E-1660122IPR009057Homeodomain-like
CDDcd000862.87E-1561116No hitNo description
PfamPF000463.1E-1661114IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.606.1E-1761114IPR009057Homeodomain-like
PRINTSPR000315.3E-68796IPR000047Helix-turn-helix motif
PROSITE patternPS00027091114IPR017970Homeobox, conserved site
PRINTSPR000315.3E-696112IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MGCEGEERML FPSSFAFVPA ESFAEAADTS GSSGEQKKAR QRRRRKPKPA PEDQAGDEQA  60
KKRRLSDEQA RLLEMSFRKE RKLETPRKVQ LAAELGLDAK QVAVWFQNRR ARHKSKLMEE  120
EFAKLRAAHD AVVLRNCHLQ TEMLKLEDRL AEAEEEKKKL ITAAAAAAAA TGAADTSSPS  180
SSSFSTVTCN PAALVGQQFG VEDEVADFSY MSQYAYNDYL MDFAACYFGG VVYDQFN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14363RRKPKPAPEDQAGDEQAKKRR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004985327.11e-100homeobox-leucine zipper protein HOX12
SwissprotA2XDK57e-83HOX12_ORYSI; Homeobox-leucine zipper protein HOX12
TrEMBLK4AEE88e-99K4AEE8_SETIT; Uncharacterized protein
STRINGSi037255m1e-99(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP200638101