PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc02690.1.g00070.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

NAC

Protein Properties

Length: 275aa MW: 29748.6 Da PI: 10.4511

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc02690.1.g00070.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	76.3	7.4e-24	4	69	63	128
NAM 63 krdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +rd+ky++g+r+nr+t sgyWkatg d+ v +++++ +glkktLvfy g+apkg +++W+m+eyrl Zmw_sc02690.1.g00070.1.sm.mkhc 4 SRDRKYRNGDRPNRVTPSGYWKATGADRMVRVEGNRSIGLKKTLVFYVGKAPKGLRSSWIMNEYRL 69 689*************************************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	32.56	1	89	IPR003441	NAC domain
SuperFamily	SSF101941	1.22E-28	3	89	IPR003441	NAC domain
Pfam	PF02365	2.5E-9	12	69	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 275 aa Download sequence Send to blast
MGSSRDRKYR NGDRPNRVTP SGYWKATGAD RMVRVEGNRS IGLKKTLVFY VGKAPKGLRS 60 SWIMNEYRLP HGEADRYQKE ISLCRVYKRP GIEDNFHLTG MTARSSGSKA AATMDKKHRT 120 SASPRLAPMF DGGHSSGLMN KPYSGTNNGL TPSSVAAAAP AAVLQTSMFR STAGSAASLS 180 SATSTEEDGT SLYHLKGANP MLPSSTHALL NANSTTMATI PIDELSRAVG SYNNNGNPNQ 240 QPLPFQGPLL PFPSMEKIWD WNPLLESPKV LTQSA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	4e-26	3	89	77	165	NO APICAL MERISTEM PROTEIN
1ut4_B	4e-26	3	89	77	165	NO APICAL MERISTEM PROTEIN
1ut7_A	4e-26	3	89	77	165	NO APICAL MERISTEM PROTEIN
1ut7_B	4e-26	3	89	77	165	NO APICAL MERISTEM PROTEIN
4dul_A	4e-26	3	89	77	165	NAC domain-containing protein 19
4dul_B	4e-26	3	89	77	165	NAC domain-containing protein 19
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Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002443756.1	1e-142	NAC domain-containing protein 35
Refseq	XP_004973013.1	1e-143	NAC domain-containing protein 35
TrEMBL	A0A1E5V4Y2	1e-147	A0A1E5V4Y2_9POAL; NAC domain-containing protein 35
STRING	Pavir.J38855.1.p	1e-146	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7706	36	50