PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc02707.1.g00130.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

TCP

Protein Properties

Length: 197aa MW: 19920.8 Da PI: 5.5658

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc02707.1.g00130.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	50.9	6.1e-16	4	52	37	88
TCP 37 deLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg 88 +eLG+++d++t++WLlqqa+pai ++tgt++++as+ +s+ s +++++ Zmw_sc02707.1.g00130.1.am.mkhc 4 KELGHKSDGETVQWLLQQAEPAIVAATGTGTIPASAL---ASVPSLPSPNAA 52 59*******************************9665...444444433333 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	12.453	1	29	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	6.2E-12	5	171	IPR005333	Transcription factor, TCP

Sequence ? help Back to Top
Protein Sequence Length: 197 aa Download sequence Send to blast
MDPKELGHKS DGETVQWLLQ QAEPAIVAAT GTGTIPASAL ASVPSLPSPN AALARPHHHH 60 MWAPPAASAG FSSAGFLNSA AGGADAAGIG GLMQRMGLPA GLDMSGGGAA GGHIGFAPMF 120 AGHAAAGVPG LELGLSQDGH IGVLAPQSLS QFYHHVGAAG GSGQLQHPHQ RHQHQHQQQE 180 DGEDEREDAE SDEESGQ

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002456872.1	7e-73	transcription factor TCP20
TrEMBL	A0A0A8YXQ0	8e-79	A0A0A8YXQ0_ARUDO; Uncharacterized protein
STRING	Sb03g044320.1	3e-72	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2864	32	69