PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc02724.1.g00060.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family GRF
Protein Properties Length: 425aa    MW: 46282.1 Da    PI: 9.6104
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc02724.1.g00060.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC77.41.4e-24170214145
                           WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                                   d+epgrCrRtDGKkWRCsr++++++k+CE+H+hrg++rsrk++e+
  Zmw_sc02724.1.g00060.1.sm.mk 170 DPEPGRCRRTDGKKWRCSREAYGDSKYCEKHIHRGKNRSRKPVEA 214
                                   79****************************************986 PP
2QLQ58.32.3e-2096130236
                           QLQ   2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36 
                                    FTa+Q+q+L++Q+l+yKy+a ++PvP++L+++++
  Zmw_sc02724.1.g00060.1.sm.mk  96 LFTASQWQELEHQALIYKYMATGAPVPHDLVVPLR 130
                                   5*******************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009512.0E-995131IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166621.29596131IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088805.9E-1597129IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166724.458170214IPR014977WRC domain
PfamPF088796.1E-20171213IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 425 aa     Download sequence    Send to blast
MTVMQHSAAR RPAALTPAQI LETRVLNSAF TVTHHLPRLL QSDLASVVSS EQLSAPSCPR  60
WILVLARVER ERERVRSMML SGHTGGAAAG RGGRRLFTAS QWQELEHQAL IYKYMATGAP  120
VPHDLVVPLR LATGVDTVPS LAFPPQPPSL GYWGCYGAAA AQFGRKAAED PEPGRCRRTD  180
GKKWRCSREA YGDSKYCEKH IHRGKNRSRK PVEATTSPAT TVNNAAAYRP SALSISPPAP  240
DAPAPPPSYG HGHHYHHPLH HHGANSASPL QLHLDPAGYQ YHAPSPPPSY HRYAHAHTSL  300
FPGGYGGPSA RELQEAELRR QRCLALGADL SLDKPAATAT EKPLRRFFDE WNGGGDDATQ  360
LSISMPTASP SASRYHNGES ACKKKGSDRC HSFSQLPVQH EEKSIHSATS SMKLDTISIK  420
FAEAL
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004964939.11e-121growth-regulating factor 2
SwissprotQ6AWY72e-95GRF2_ORYSJ; Growth-regulating factor 2
TrEMBLA0A1E5WIJ31e-122A0A1E5WIJ3_9POAL; Growth-regulating factor 2
STRINGPavir.Da01847.1.p1e-122(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP139922527