PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc02739.1.g00120.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 328aa    MW: 35546.6 Da    PI: 4.2512
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc02739.1.g00120.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.81.3e-18139190256
                           AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                                   +y+GVr+++ +g++vAeIrdp+ +g   r++lg+++ + +Aa+a+++ + +++g+
  Zmw_sc02739.1.g00120.1.am.mk 139 KYRGVRQRP-WGKYVAEIRDPKRRG--SRVWLGTYDLPIDAARAYDRTAFRMRGA 190
                                   8********.**********96554..*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.109.4E-31138198IPR001471AP2/ERF domain
SMARTSM003804.3E-33139203IPR001471AP2/ERF domain
CDDcd000182.74E-27139198No hitNo description
SuperFamilySSF541719.15E-21139198IPR016177DNA-binding domain
PROSITE profilePS5103222.458139197IPR001471AP2/ERF domain
PfamPF008473.9E-13139189IPR001471AP2/ERF domain
PRINTSPR003671.1E-12140151IPR001471AP2/ERF domain
PRINTSPR003671.1E-12179199IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MDFTGEADDF ALDFIRDLLL GNDDGFPEAS WVVSDDPSSF PVLPPPTVEP AFEPMPFSSH  60
QQQQEEEELP EWYVDMTHGH TCAAPTAAVA EGAFLVAQEP AQPVMITFER EQLSPVSSHE  120
WAASAPAPAV PAPVEDFRKY RGVRQRPWGK YVAEIRDPKR RGSRVWLGTY DLPIDAARAY  180
DRTAFRMRGA KAILNFPNEV GTRGADLLAS APASAKQGAA AKKRKLQQVD ESDVEVVAVV  240
NKAAKVDEVP SWTTSTSVSS TSSPSSISTC PATDVVSSTV TSTETMVAGD GAEEFPGTPS  300
CWSWEQSWEE LLCGLSPHLA LIDMADTS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-24138202468ATERF1
3gcc_A1e-24138202468ATERF1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002446883.19e-78ethylene-responsive transcription factor 6
TrEMBLC5YDE72e-76C5YDE7_SORBI; Uncharacterized protein
STRINGSb06g024360.13e-77(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP10337465