PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc02739.1.g00150.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

HD-ZIP

Protein Properties

Length: 232aa MW: 25673.3 Da PI: 8.7139

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc02739.1.g00150.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	61.4	1.4e-19	73	127	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++k+q +Le+ F+++++++ ++++ LA++lgL rqV vWFqNrRa+ k Zmw_sc02739.1.g00150.1.sm.mkhc 73 RKKLRLSKDQSAVLEDSFREHPTLNPRQKAALAQQLGLRPRQVEVWFQNRRARTK 127 788899***********************************************98 PP
2	HD-ZIP_I/II	129.3	1.5e-41	73	162	1	91
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeener 79 +kk+rlsk+q+++LE+sF+e+ +L+p++K++la++Lgl+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+r Zmw_sc02739.1.g00150.1.sm.mkhc 73 RKKLRLSKDQSAVLEDSFREHPTLNPRQKAALAQQLGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCETLTEENRR 151 69*************************************************************************** PP HD-ZIP_I/II 80 LekeveeLreel 91 L+kev+eLr +l Zmw_sc02739.1.g00150.1.sm.mkhc 152 LQKEVQELR-AL 162 ******9.55 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	6.27E-19	64	130	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.313	69	129	IPR001356	Homeobox domain
SMART	SM00389	7.4E-18	71	133	IPR001356	Homeobox domain
Pfam	PF00046	6.5E-17	73	127	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	7.2E-19	73	127	IPR009057	Homeodomain-like
CDD	cd00086	7.88E-17	73	130	No hit	No description
PRINTS	PR00031	4.0E-6	100	109	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	104	127	IPR017970	Homeobox, conserved site
PRINTS	PR00031	4.0E-6	109	125	IPR000047	Helix-turn-helix motif
SMART	SM00340	4.4E-25	129	172	IPR003106	Leucine zipper, homeobox-associated
Pfam	PF02183	2.1E-11	129	163	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 232 aa Download sequence Send to blast
MMERADDLGL SLSLSSSLAP RTHHHVAMLL RSPEKRFLEM PLLPAKRSEV AAEEGLRGGS 60 DEEDGGCGID GSRKKLRLSK DQSAVLEDSF REHPTLNPRQ KAALAQQLGL RPRQVEVWFQ 120 NRRARTKLKQ TEVDCEFLKR CCETLTEENR RLQKEVQELR ALKLVSPHLY MHMSPPTTLT 180 MCPSCERVSN ANSADRRAGA GSVDASPAAA GVDGAICHRP IAVRPQQSLA SS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	71	77	SRKKLRL
2	121	129	RRARTKLKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004976428.1	1e-131	homeobox-leucine zipper protein HOX17
Swissprot	Q0JB92	1e-111	HOX17_ORYSJ; Homeobox-leucine zipper protein HOX17
TrEMBL	K3Y9R6	1e-130	K3Y9R6_SETIT; Uncharacterized protein
STRING	Si010958m	1e-131	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2587	38	89

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]