PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc02748.1.g00060.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

Dof

Protein Properties

Length: 347aa MW: 35880.3 Da PI: 9.2019

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc02748.1.g00060.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	118.2	3.1e-37	84	142	3	61
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 e lkcprCdstntkfCy+nnyslsqPr+fC+aCrryWt+GGalrnvPvGgg r++ k+ Zmw_sc02748.1.g00060.1.sm.mk 84 EPGLKCPRCDSTNTKFCYFNNYSLSQPRHFCRACRRYWTRGGALRNVPVGGGYRRHAKR 142 56789************************************************998765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-38	67	139	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	7.1E-32	87	141	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.789	87	141	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	89	125	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 347 aa Download sequence Send to blast
MIFSPAFLDS SSWNDNQQQQ QAHHQQVVAS TGDGPSHEQL LQPSIMGGGA LPPEGGGTAQ 60 VMVGPAKPMS MSERARLARI PLPEPGLKCP RCDSTNTKFC YFNNYSLSQP RHFCRACRRY 120 WTRGGALRNV PVGGGYRRHA KRAKPKAAAA AAATPVTTAA ATAVLAPGAA AASTSSTCTT 180 ANAPALFGQT AMLGGGNLSM LPPLLRLADF DAMSLGSSFT GIGKPTLDAV GNYSIGGASG 240 GAGAGAGLDQ WRWHQQMQGF PFLHAMDQGS LAPSLAMVMP GAFQLGLDNT DSRGAGTGGG 300 EDGSGEINGM APTKREGGYT RGMYGAHHHL TAGYTTSYSN ATGNHLL

Sequence ? help Back to Top

Protein Sequence Length: 347 aa Download sequence Send to blast

MIFSPAFLDS SSWNDNQQQQ QAHHQQVVAS TGDGPSHEQL LQPSIMGGGA LPPEGGGTAQ  60
VMVGPAKPMS MSERARLARI PLPEPGLKCP RCDSTNTKFC YFNNYSLSQP RHFCRACRRY  120
WTRGGALRNV PVGGGYRRHA KRAKPKAAAA AAATPVTTAA ATAVLAPGAA AASTSSTCTT  180
ANAPALFGQT AMLGGGNLSM LPPLLRLADF DAMSLGSSFT GIGKPTLDAV GNYSIGGASG  240
GAGAGAGLDQ WRWHQQMQGF PFLHAMDQGS LAPSLAMVMP GAFQLGLDNT DSRGAGTGGG  300
EDGSGEINGM APTKREGGYT RGMYGAHHHL TAGYTTSYSN ATGNHLL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012700432.1	1e-115	dof zinc finger protein DOF3.6 isoform X3
TrEMBL	A0A0A9CTK5	1e-128	A0A0A9CTK5_ARUDO; Uncharacterized protein
STRING	Pavir.Ca00639.1.p	1e-120	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP140	37	367