PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc02750.1.g00090.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family NF-YB
Protein Properties Length: 158aa    MW: 17144.1 Da    PI: 5.334
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc02750.1.g00090.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB161.11.6e-5017120194
                           NF-YB   1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtse..........asdkcqrekrktingddllw 69 
                                     vreqdrflPian+srimkk++Pan+ki+kdaket+qecvsefisfvts+          asdkcq+ekrktingddllw
  Zmw_sc02750.1.g00090.1.sm.mkhc  17 VREQDRFLPIANISRIMKKAVPANGKIAKDAKETLQECVSEFISFVTSDvsdfgcdafrASDKCQKEKRKTINGDDLLW 95 
                                     69*********************************************964444445555899***************** PP

                           NF-YB  70 alatlGfedyveplkvylkkyrele 94 
                                     a+atlGfe+yv+plk yl+kyre +
  Zmw_sc02750.1.g00090.1.sm.mkhc  96 AMATLGFEEYVDPLKNYLQKYREGD 120
                                     **********************965 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.109.5E-4915127IPR009072Histone-fold
SuperFamilySSF471138.38E-3420122IPR009072Histone-fold
PfamPF008081.2E-222397IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006152.0E-195169No hitNo description
PRINTSPR006152.0E-198098No hitNo description
PRINTSPR006152.0E-1999117No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 158 aa     Download sequence    Send to blast
MADDSGNNEG SGGGGGVREQ DRFLPIANIS RIMKKAVPAN GKIAKDAKET LQECVSEFIS  60
FVTSDVSDFG CDAFRASDKC QKEKRKTING DDLLWAMATL GFEEYVDPLK NYLQKYREGD  120
SKLSTKGGDG SVKKDAINPH GGTSSSTNQS NGFEFLRM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_B3e-4418118494NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4csr_A3e-4418118494NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. May regulate the expression of photosynthetic genes, and may be involved in chloroplast and amyloplast development. {ECO:0000269|PubMed:14617083}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001278514.14e-77uncharacterized protein LOC100285917
SwissprotQ5QMG35e-69NFYB2_ORYSJ; Nuclear transcription factor Y subunit B-2
TrEMBLA0A3L6SIL74e-77A0A3L6SIL7_PANMI; Uncharacterized protein
STRINGPavir.J35907.1.p2e-76(Panicum virgatum)
STRINGGRMZM2G303465_P042e-76(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20138331