PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc02820.1.g00090.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 219aa MW: 24018.8 Da PI: 7.0047

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc02820.1.g00090.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	40	7.2e-13	153	198	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri +++ +L++l+P+ +k + +e+L AveYIk+Lq Zmw_sc02820.1.g00090.1.am.mkhc 153 SIAERERRTRISKRLKKLQDLVPNM----DKQTNTSEMLDTAVEYIKELQ 198 689*******************7....688***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.348	147	197	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	5.5E-16	150	209	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	5.34E-13	151	202	No hit	No description
Gene3D	G3DSA:4.10.280.10	8.8E-17	152	208	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.3E-12	153	203	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.3E-10	153	198	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 219 aa Download sequence Send to blast
MSATTGMGSY PHGGTDTMAH GHNRRLSSQW SFSRQDLPQI SEMGMIPDIG ESIIAGGCNS 60 SSDGGAQSSY LSRNFSVGSW DDTNSIMFSS PGKKVKVDAA DDMVTSFSNI DSQFGLSKSS 120 LDMSGMDDYL QLQQDSIACR VRAKRGCATH PRSIAERERR TRISKRLKKL QDLVPNMDKQ 180 TNTSEMLDTA VEYIKELQSQ VEKLKHDQAN CSCAGNQNC

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025814593.1	1e-134	transcription factor bHLH128-like
TrEMBL	A0A0A9DES0	1e-141	A0A0A9DES0_ARUDO; Uncharacterized protein
STRING	Pavir.J01306.1.p	1e-131	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7071	37	52