PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc02842.1.g00030.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

WRKY

Protein Properties

Length: 250aa MW: 27474.7 Da PI: 6.8411

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc02842.1.g00030.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	24.6	5.2e-08	17	65	16	59
TT-SS-EEEEEE-ST...T---EEEEEE-S..SSTTEEEEEEES--SS- CS WRKY 16 kgsefprsYYrCtsa...gCpvkkkversa..edpkvveitYegeHnhe 59 + +f rsY+rC ++ gC ++k v++++ +d+ +++++ +++H+++ Zmw_sc02842.1.g00030.1.am.mk 17 QRHPFKRSYFRCPYKhdtGCLATKYVQQKNdsSDTPMFQVISNNDHTCN 65 457999*****998999***9875226899*********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50811	9.408	1	65	IPR003657	WRKY domain
SuperFamily	SSF118290	4.05E-8	12	66	IPR003657	WRKY domain
SMART	SM00774	5.9E-7	12	66	IPR003657	WRKY domain
Gene3D	G3DSA:2.20.25.80	1.9E-7	14	65	IPR003657	WRKY domain
Pfam	PF03106	3.0E-10	15	64	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 250 aa Download sequence Send to blast
MIDGRLRVEE IWRKEDQRHP FKRSYFRCPY KHDTGCLATK YVQQKNDSSD TPMFQVISNN 60 DHTCNCTAAS SSSAKKNIST LPIPGGAAGH RDFVVTEQEA TAVALPPLAD VSSVDVALDE 120 QIQEPFAITD HCDFTIGAAG EIWANRLRTV RSGQHVQHVH VWTMASSSSP PSPGFKRLIK 180 QSCKLLADED HSQTQQAGVR VYTREDAGKR MQQTASASAL PLDYSGPGQA EYHASILTPV 240 LGTQQCEFGS

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP27829	3	4