PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc02851.1.g00120.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

HSF

Protein Properties

Length: 116aa MW: 12573.1 Da PI: 5.6115

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc02851.1.g00120.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	80.6	2.4e-25	14	79	2	66
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTT.EEE-- CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYg.Fkkvk 66 Fl+k+ye+++d++++ ++ w+ g+sfvv ++ ef +++LpkyFkh+nf+SFvRQLn+Y F++v+ Zmw_sc02851.1.g00120.1.sm.mk 14 FLSKTYEMVDDPATDAVVAWTPPGTSFVVANQAEFCRDLLPKYFKHNNFSSFVRQLNTYHtFRQVN 79 9**********************************************************5477765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46785	3.4E-24	9	79	IPR011991	Winged helix-turn-helix DNA-binding domain
Gene3D	G3DSA:1.10.10.10	8.3E-28	9	79	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	7.3E-28	10	98	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	5.5E-17	14	37	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Pfam	PF00447	2.0E-22	14	79	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	5.5E-17	52	64	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	5.5E-17	65	77	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 116 aa Download sequence Send to blast
MEGGGGGGSS LPPFLSKTYE MVDDPATDAV VAWTPPGTSF VVANQAEFCR DLLPKYFKHN 60 NFSSFVRQLN TYHTFRQVNP LCPDVSNQLD AMALGKLTQS NGSLQMRISL GDNGTV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5d5u_B	5e-24	4	78	19	92	Heat shock factor protein 1
5d5v_B	5e-24	4	78	19	92	Heat shock factor protein 1
5d5v_D	5e-24	4	78	19	92	Heat shock factor protein 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002456359.1	7e-46	heat stress transcription factor A-4b
Refseq	XP_025816815.1	7e-46	heat stress transcription factor A-4b isoform X1
Refseq	XP_025816816.1	7e-46	heat stress transcription factor A-4b isoform X2
Swissprot	Q94J16	3e-38	HFA4B_ORYSJ; Heat stress transcription factor A-4b
TrEMBL	A0A1W0VZI6	4e-45	A0A1W0VZI6_SORBI; Uncharacterized protein
STRING	Sb03g034630.1	3e-45	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP121	37	394

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Shim D, et al. Orthologs of the class A4 heat shock transcription factor HsfA4a confer cadmium tolerance in wheat and rice. Plant Cell, 2009. 21(12): p. 4031-43 [PMID:20028842] Guan JC, et al. A 9 bp cis-element in the promoters of class I small heat shock protein genes on chromosome 3 in rice mediates L-azetidine-2-carboxylic acid and heat shock responses. J. Exp. Bot., 2010. 61(15): p. 4249-61 [PMID:20643810]