PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc02857.1.g00070.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

ERF

Protein Properties

Length: 185aa MW: 20257.6 Da PI: 7.2346

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc02857.1.g00070.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	60.5	3.8e-19	39	88	2	55
AP2 2 gykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr ++ +gr++AeIrd + r +r++lg+++t+ eAa a+++a+ +l+g Zmw_sc02857.1.g00070.1.am.mk 39 HYRGVRKRP-WGRYAAEIRDpW-----RkTRVWLGTYDTPVEAALAYDRAAVALRG 88 6******.******88.....45*********************9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00018	1.26E-27	39	95	No hit	No description
Pfam	PF00847	1.8E-12	39	88	IPR001471	AP2/ERF domain
SMART	SM00380	2.0E-31	39	102	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	21.43	39	96	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	4.2E-29	39	96	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	2.22E-21	39	96	IPR016177	DNA-binding domain
PRINTS	PR00367	9.9E-10	40	51	IPR001471	AP2/ERF domain
PRINTS	PR00367	9.9E-10	62	78	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 185 aa Download sequence Send to blast
MEWHMMGGHH RGRDSVAGAV GDAGGEEGGE QPQPLRGDHY RGVRKRPWGR YAAEIRDPWR 60 KTRVWLGTYD TPVEAALAYD RAAVALRGFK ARTNFGSASG GNCRYPPRPA APHPVQAFGG 120 LDISQPSPWH FVYLPSRLHQ AMETPEQDFV EDVAASLPST ALELRTGPGS LPFDLNEPPS 180 LLFGS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2gcc_A	7e-20	36	95	2	62	ATERF1
3gcc_A	7e-20	36	95	2	62	ATERF1
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Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00645	PBM	Transfer from LOC_Os05g41760	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001141110.1	5e-64	uncharacterized protein LOC100273194
TrEMBL	A0A1E5UZN3	6e-64	A0A1E5UZN3_9POAL; Ethylene-responsive transcription factor 12
STRING	GRMZM2G066158_P01	2e-63	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP103	37	465