PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc02870.1.g00050.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB
Protein Properties Length: 307aa    MW: 32828.2 Da    PI: 8.7706
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc02870.1.g00050.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.52.7e-1772120148
                                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                 Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 
                                     rg+W++eEde l  +v+++G+g +W + +++ g++R++k+c++rw++yl
  Zmw_sc02870.1.g00050.1.am.mkhc  72 RGPWSPEEDEALRSYVQRHGSGgNWIALPKKAGLKRCGKSCRLRWLNYL 120
                                     89*********************************************97 PP
2Myb_DNA-binding44.73.1e-14127169246
                                     SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
                 Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                     g +T+eEd  +v +  qlG++ W++Ia+ +  gRt++++k++w++
  Zmw_sc02870.1.g00050.1.am.mkhc 127 GGFTEEEDAVIVSLYSQLGSK-WSLIASQLE-GRTDNDVKNYWNT 169
                                     569******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.50967120IPR017930Myb domain
SuperFamilySSF466892.9E-2770167IPR009057Homeodomain-like
SMARTSM007178.0E-1271122IPR001005SANT/Myb domain
PfamPF002493.1E-1672120IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-2373127IPR009057Homeodomain-like
CDDcd001671.19E-974120No hitNo description
PROSITE profilePS5129421.415121175IPR017930Myb domain
SMARTSM007177.8E-12125173IPR001005SANT/Myb domain
PfamPF002494.3E-12127169IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-22128175IPR009057Homeodomain-like
CDDcd001676.34E-10129171No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
HQWPQAPNEQ PVDRYKYHLL PAQQPSPLSC PPLLLPPARR RVGLPGTWVW VGGVCCLPMG  60
RTPCCDRTAV KRGPWSPEED EALRSYVQRH GSGGNWIALP KKAGLKRCGK SCRLRWLNYL  120
RSDIRHGGFT EEEDAVIVSL YSQLGSKWSL IASQLEGRTD NDVKNYWNTK LKKRLAAAAL  180
SVSTPSPPPL ARPPVPTPAA AHTSTSLFPS IVIPSVKTKT YTCDDFLAPA AFIRDTSLAS  240
GGGSTPPSAA SSASTWSTDN GAAAAAAAAD GFLLDFCGGS STDLGASGQL ELPGGYYYPL  300
DPSLSLV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-21721757108B-MYB
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004968503.11e-115transcription factor RAX2
TrEMBLA0A3L6SQD01e-114A0A3L6SQD0_PANMI; Transcription factor RAX2-like
STRINGSi002629m1e-114(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP13538412