PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc02882.1.g00130.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

LBD

Protein Properties

Length: 241aa MW: 26148.7 Da PI: 8.3861

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc02882.1.g00130.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	130	1e-40	106	205	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvil 81 +CaaCk+lrr+Ca++C++apyf ++p+kf +vhk+FGasnv+k+l ++pe er da+ slvyeA+ r+rdPvyG++g ++ Zmw_sc02882.1.g00130.1.am.mk 106 PCAACKLLRRRCAQECPFAPYFSPHEPQKFVAVHKVFGASNVSKMLLEVPEAERGDAVGSLVYEANLRLRDPVYGCMGAVS 186 7****************************************************************************** PP DUF260 82 klqqqleqlkaelallkee 100 +lqqql+ l+ael+++++e Zmw_sc02882.1.g00130.1.am.mk 187 DLQQQLNALEAELEAARQE 205 ************99987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	24.972	105	206	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.6E-40	106	203	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 241 aa Download sequence Send to blast
MQPIRCPRPV RLTWRGRGGW WRYERRCGAT DDGAVLGDGA AGDRGRCSSG RRAQSDSVIE 60 RLDEIRKKIK GEPEASGITP SASTVAAETP VPRRLGLGGA LNTVTPCAAC KLLRRRCAQE 120 CPFAPYFSPH EPQKFVAVHK VFGASNVSKM LLEVPEAERG DAVGSLVYEA NLRLRDPVYG 180 CMGAVSDLQQ QLNALEAELE AARQEVTKPA EAPGMSTSAV VYVAEAVEQY PSSDRYKSLN 240 T

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-40	106	224	11	131	LOB family transfactor Ramosa2.1
5ly0_B	1e-40	106	224	11	131	LOB family transfactor Ramosa2.1
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Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004970407.1	6e-76	LOB domain-containing protein 15
Swissprot	Q9AT61	2e-59	LBD13_ARATH; LOB domain-containing protein 13
TrEMBL	A0A1E5VHX5	5e-78	A0A1E5VHX5_9POAL; LOB domain-containing protein 15
STRING	OMERI01G32170.1	6e-77	(Oryza meridionalis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2630	38	91

Publications ? help Back to Top
Cho C,Jeon E,Pandey SK,Ha SH,Kim J LBD13 positively regulates lateral root formation in Arabidopsis. Planta, 2019. 249(4): p. 1251-1258 [PMID:30627888]