PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc02883.1.g00080.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

NAC

Protein Properties

Length: 357aa MW: 39309.3 Da PI: 6.3232

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc02883.1.g00080.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	179.5	8.6e-56	16	143	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk 79 lppGfrFhPtdee+v++yL++k+ ++ ++ +i evd++k+ePwdLp +k +ekewyfF+++d+ky+tg+r+nrat+ Zmw_sc02883.1.g00080.1.sm.mkhc 16 LPPGFRFHPTDEEIVTHYLTPKALDRFFTS-GIIGEVDLNKCEPWDLPGLAKMGEKEWYFFCHKDRKYPTGTRTNRATE 93 79**********************9988.89***********8888899******************** PP NAM 80 sgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 sgyWkatgkdke+++ +g lvg+kktLvfy+grap+gekt+Wvmhe+rle Zmw_sc02883.1.g00080.1.sm.mkhc 94 SGYWKATGKDKEIFRGRGVLVGMKKTLVFYRGRAPRGEKTEWVMHEFRLE 143 *********************************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.7E-63	8	166	IPR003441	NAC domain
PROSITE profile	PS51005	58.522	16	166	IPR003441	NAC domain
Pfam	PF02365	5.0E-29	17	142	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:1900057	Biological Process	positive regulation of leaf senescence
GO:1903648	Biological Process	positive regulation of chlorophyll catabolic process
GO:0000975	Molecular Function	regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 357 aa Download sequence Send to blast
MSEVSVINQT AGQLELPPGF RFHPTDEEIV THYLTPKALD RFFTSGIIGE VDLNKCEPWD 60 LPGLAKMGEK EWYFFCHKDR KYPTGTRTNR ATESGYWKAT GKDKEIFRGR GVLVGMKKTL 120 VFYRGRAPRG EKTEWVMHEF RLEGKLPQPL PRSAKDEWAV CKVVNKELLA AKPGASIVTA 180 GAEIERVGSL GFISDLLDSA AELPPLMDPT FGADVDEVID FKGLASTSTS GHGAAPGGVS 240 YLPVKTEEQY LHHHQQPQST PMFYTGSSPY FSLPEVNSGD IQTAIRRYCK AELVASGQTT 300 SVVSPSRETG LSTDPNAAAG YAEISSAATP SSSHHHHHPF LQELDDPVLN LADIWKY

Sequence ? help Back to Top

Protein Sequence Length: 357 aa Download sequence Send to blast

MSEVSVINQT AGQLELPPGF RFHPTDEEIV THYLTPKALD RFFTSGIIGE VDLNKCEPWD  60
LPGLAKMGEK EWYFFCHKDR KYPTGTRTNR ATESGYWKAT GKDKEIFRGR GVLVGMKKTL  120
VFYRGRAPRG EKTEWVMHEF RLEGKLPQPL PRSAKDEWAV CKVVNKELLA AKPGASIVTA  180
GAEIERVGSL GFISDLLDSA AELPPLMDPT FGADVDEVID FKGLASTSTS GHGAAPGGVS  240
YLPVKTEEQY LHHHQQPQST PMFYTGSSPY FSLPEVNSGD IQTAIRRYCK AELVASGQTT  300
SVVSPSRETG LSTDPNAAAG YAEISSAATP SSSHHHHHPF LQELDDPVLN LADIWKY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	9e-52	13	172	14	171	NO APICAL MERISTEM PROTEIN
1ut4_B	9e-52	13	172	14	171	NO APICAL MERISTEM PROTEIN
1ut7_A	9e-52	13	172	14	171	NO APICAL MERISTEM PROTEIN
1ut7_B	9e-52	13	172	14	171	NO APICAL MERISTEM PROTEIN
3swm_A	1e-51	13	172	17	174	NAC domain-containing protein 19
3swm_B	1e-51	13	172	17	174	NAC domain-containing protein 19
3swm_C	1e-51	13	172	17	174	NAC domain-containing protein 19
3swm_D	1e-51	13	172	17	174	NAC domain-containing protein 19
3swp_A	1e-51	13	172	17	174	NAC domain-containing protein 19
3swp_B	1e-51	13	172	17	174	NAC domain-containing protein 19
3swp_C	1e-51	13	172	17	174	NAC domain-containing protein 19
3swp_D	1e-51	13	172	17	174	NAC domain-containing protein 19
4dul_A	9e-52	13	172	14	171	NAC domain-containing protein 19
4dul_B	9e-52	13	172	14	171	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that acts as positive regulator of leaf senescence. Activates NYC1, SGR1, SGR2 and PAO, which are genes involved in chlorophyll catabolic processes. Activates senescence-associated genes, such as RNS1, SAG12 and SAG13. {ECO:0000269\|PubMed:27021284}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00332	DAP	Transfer from AT3G04060	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004984514.1	0.0	NAC domain-containing protein 79
Swissprot	Q9SQQ6	2e-90	NAC46_ARATH; NAC domain-containing protein 46
TrEMBL	A0A368SRF4	0.0	A0A368SRF4_SETIT; Uncharacterized protein
STRING	Pavir.Ib01526.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1862	38	104

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Oda-Yamamizo C, et al. Corrigendum: The NAC transcription factor ANAC046 is a positive regulator of chlorophyll degradation and senescence in Arabidopsis leaves. Sci Rep, 2016. 6: p. 35125 [PMID:27759025] O'Shea C, et al. Structures and Short Linear Motif of Disordered Transcription Factor Regions Provide Clues to the Interactome of the Cellular Hub Protein Radical-induced Cell Death1. J. Biol. Chem., 2017. 292(2): p. 512-527 [PMID:27881680]