PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc02888.1.g00100.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 283aa    MW: 30485.9 Da    PI: 9.2216
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc02888.1.g00100.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.33.2e-091591981155
                                     HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                             HLH  11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                      RR++i +++ +L++l+P++      K +Ka++L + ++Y+k Lq
  Zmw_sc02888.1.g00100.1.sm.mkhc 159 LRREKISDRMKNLQDLVPNS-----NKADKASMLDEIIDYVKFLQ 198
                                     6******************7.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.275148197IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.7E-9154203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-12158207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.7E-6159198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.06E-10160202No hitNo description
Gene3DG3DSA:4.10.280.101.4E-13161202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MRHHEAFVVV VVPSGQTVVV LGHSPRAPQP GHHRVLLRGA PAAQRVFSPS HLTSVTPAFP  60
LAPLLPSHHS ARLSFLLQPP LAVAVFSPGH HPGESPTLRF PASPSTVGRV ASSLFSDSKE  120
FFRGRLPSFA TIQETNLPGG GFKTQKQKVL TATSYLLQLR REKISDRMKN LQDLVPNSNK  180
ADKASMLDEI IDYVKFLQLQ VKGCCDQPLS APTAAHGLSD AQDSEDSEDT LAFEQEVVKL  240
METSVTSAMQ YLQNKGLCLM PVALASSISN EKGTAGAAVP AQR
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32543879