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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Zmw_sc02892.1.g00060.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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| Family | HB-other | ||||||||
| Protein Properties | Length: 267aa MW: 28666.1 Da PI: 8.7212 | ||||||||
| Description | HB-other family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | Homeobox | 24 | 6.6e-08 | 14 | 75 | 7 | 56 |
--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC..........TS-HHHHHHHHHHHHHHHH CS
Homeobox 7 ftkeqleeLeelFek..nrypsaeereeLAkkl..........gLterqVkvWFqNrRakek 56
f ++++ e+e+ ++ n p ++ + LA+k ++ +qV +WFqNrR+ ++
Zmw_sc02892.1.g00060.1.am.mkhc 14 FLPSEVAEMEARLQQlnNTIPGRDVLQSLADKFsasperagraAIQPKQVWNWFQNRRYSHR 75
55677888888888665888999999*******9******999****************988 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| SMART | SM00389 | 0.0037 | 7 | 81 | IPR001356 | Homeobox domain |
| SuperFamily | SSF46689 | 1.5E-9 | 12 | 77 | IPR009057 | Homeodomain-like |
| PROSITE profile | PS50071 | 9.831 | 13 | 77 | IPR001356 | Homeobox domain |
| CDD | cd00086 | 1.26E-4 | 13 | 75 | No hit | No description |
| Gene3D | G3DSA:1.10.10.60 | 4.2E-6 | 14 | 79 | IPR009057 | Homeodomain-like |
| Pfam | PF00046 | 2.5E-5 | 14 | 75 | IPR001356 | Homeobox domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 267 aa Download sequence Send to blast |
MGRPPSSGAP AFRFLPSEVA EMEARLQQLN NTIPGRDVLQ SLADKFSASP ERAGRAAIQP 60 KQVWNWFQNR RYSHRAKSVR PAPPPPSKMA PSGADRLQHA TTASAFRAAQ TPAAAAAGAH 120 PGSSPAAGTM LLHFCLIGCS SPVTRKYGFV FLDSEQRKMN GSIAAATPSA DVRTPPKQIK 180 KESASNEKSP AEEKPLKQHK MRDVKTDEVT VVSDHEEAAG NTARPTPSVQ AEAHNDSTSD 240 VAMDTDPAPV VEVDDEVQVV DKVKEDK |
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_004956551.1 | 3e-63 | protein SAWADEE HOMEODOMAIN HOMOLOG 2 | ||||
| Refseq | XP_022680276.1 | 3e-63 | protein SAWADEE HOMEODOMAIN HOMOLOG 2 | ||||
| Refseq | XP_022680277.1 | 3e-63 | protein SAWADEE HOMEODOMAIN HOMOLOG 2 | ||||
| Refseq | XP_022680278.1 | 3e-63 | protein SAWADEE HOMEODOMAIN HOMOLOG 2 | ||||
| TrEMBL | K3ZU86 | 7e-62 | K3ZU86_SETIT; Uncharacterized protein | ||||
| STRING | Si030167m | 1e-62 | (Setaria italica) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Monocots | OGMP4190 | 29 | 48 |
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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