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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Zmw_sc02893.1.g00040.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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| Family | WRKY | ||||||||
| Protein Properties | Length: 222aa MW: 24934.6 Da PI: 6.6724 | ||||||||
| Description | WRKY family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | WRKY | 64.4 | 1.8e-20 | 69 | 128 | 3 | 58 |
-SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-.SSSTTEEEEEEES--SS CS
WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkvers.aedpkvveitYegeHnh 58
Dg+ WrKYGqK++kgse+pr YYrC+++ +C + ++++ +edp v ++tY+ eH++
Zmw_sc02893.1.g00040.1.sm.mk 69 DGHLWRKYGQKKIKGSEYPRLYYRCSYRedrHCLASMLLQQQnNEDPPVYHVTYTFEHTC 128
9**************************99999****9998651689************98 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| Gene3D | G3DSA:2.20.25.80 | 2.5E-20 | 55 | 129 | IPR003657 | WRKY domain |
| SuperFamily | SSF118290 | 3.4E-19 | 62 | 129 | IPR003657 | WRKY domain |
| SMART | SM00774 | 1.9E-28 | 67 | 130 | IPR003657 | WRKY domain |
| Pfam | PF03106 | 3.5E-22 | 69 | 128 | IPR003657 | WRKY domain |
| PROSITE profile | PS50811 | 16.088 | 69 | 131 | IPR003657 | WRKY domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
| GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 222 aa Download sequence Send to blast |
MASWRMDSLK SFNFGDPSTQ DAMGSGSESY SPPESGFGLS LPEKSPPDGR RRRRDTPSRS 60 EYTYTPYLDG HLWRKYGQKK IKGSEYPRLY YRCSYREDRH CLASMLLQQQ NNEDPPVYHV 120 TYTFEHTCGA RSVPMPDIVV EHQQPTARQE GLVLSFDSPG GGHQRMHHHQ AMSSPSPYTM 180 LSFGSSSQRP VDFHTDPAAG SSSFPAEDLL APSPSMNGDC DM |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 6ir8_A | 9e-14 | 69 | 128 | 10 | 68 | OsWRKY45 |
| Search in ModeBase | ||||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_002456547.1 | 5e-79 | probable WRKY transcription factor 30 | ||||
| TrEMBL | C5XNA0 | 1e-77 | C5XNA0_SORBI; Uncharacterized protein | ||||
| STRING | Sb03g038180.1 | 2e-78 | (Sorghum bicolor) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Monocots | OGMP11529 | 24 | 33 |
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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