PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc02893.1.g00050.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

WRKY

Protein Properties

Length: 479aa MW: 53256.3 Da PI: 10.9697

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc02893.1.g00050.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	29.5	1.5e-09	278	320	20	58
S-EEEEEE-ST...T---EEEEEE-.SSSTTEEEEEEES--SS CS WRKY 20 fprsYYrCtsa...gCpvkkkvers.aedpkvveitYegeHnh 58 r YYrCt++ gC ++k+ve++ ++dp ++ ++Y++eH++ Zmw_sc02893.1.g00050.1.am.mk 278 AKRCYYRCTYHqdhGCLATKHVEQTnSQDPPLFRVIYTNEHTC 320 679*****98999***975268***********98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00774	1.2E-8	267	322	IPR003657	WRKY domain
Gene3D	G3DSA:2.20.25.80	4.0E-9	276	321	IPR003657	WRKY domain
Pfam	PF03106	9.0E-11	276	320	IPR003657	WRKY domain
SuperFamily	SSF118290	9.55E-9	277	320	IPR003657	WRKY domain
PROSITE profile	PS50811	9.305	280	318	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 479 aa Download sequence Send to blast
MRSGRRSPHG AAHGRARVHV APQPATKVTF GTEFGSRVRL RSQFTWDDSF CFFVRLRRFS 60 VQFLHRRLRL APFRLNPFSS GPVQQIAPKM VRIADEQQLG SLVTSRPAHH NYQRGSSGPR 120 KSPRNPLPSP RHGAGRRRLR NPAAASRSRP LMVVQADETA RPGLAAADVR LPPLRLVGAA 180 PARLSYPPED IGVSASRSWS SCAYMIYRPR FSVALDKKNR TRHFHSTCIL VKRPSWSFYK 240 GLEAMAKRDD HRTCSSGCSN GTHKRLLRDS SGYSQEHAKR CYYRCTYHQD HGCLATKHVE 300 QTNSQDPPLF RVIYTNEHTC VSTNASSIYI QQMADASLRK AEMGSPGHEV VQEQEGAIES 360 SLLGVINGGR EVATTSDVMH DMQENTAALL SSKYFNLSST VGRSSQKTTP SISPALPPAS 420 EELRMNFVEP LESHCLLGAS PFHIPPQSAG VSPSVQGVER SSHGRRKLQR ATDRHLQLA

Sequence ? help Back to Top

Protein Sequence Length: 479 aa Download sequence Send to blast

MRSGRRSPHG AAHGRARVHV APQPATKVTF GTEFGSRVRL RSQFTWDDSF CFFVRLRRFS  60
VQFLHRRLRL APFRLNPFSS GPVQQIAPKM VRIADEQQLG SLVTSRPAHH NYQRGSSGPR  120
KSPRNPLPSP RHGAGRRRLR NPAAASRSRP LMVVQADETA RPGLAAADVR LPPLRLVGAA  180
PARLSYPPED IGVSASRSWS SCAYMIYRPR FSVALDKKNR TRHFHSTCIL VKRPSWSFYK  240
GLEAMAKRDD HRTCSSGCSN GTHKRLLRDS SGYSQEHAKR CYYRCTYHQD HGCLATKHVE  300
QTNSQDPPLF RVIYTNEHTC VSTNASSIYI QQMADASLRK AEMGSPGHEV VQEQEGAIES  360
SLLGVINGGR EVATTSDVMH DMQENTAALL SSKYFNLSST VGRSSQKTTP SISPALPPAS  420
EELRMNFVEP LESHCLLGAS PFHIPPQSAG VSPSVQGVER SSHGRRKLQR ATDRHLQLA

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP11814	31	39