PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc02899.1.g00150.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C2H2
Protein Properties Length: 219aa    MW: 22593.2 Da    PI: 8.9961
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc02899.1.g00150.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.71e-052544221
                                  EETTTTEEESSHHHHHHHHH CS
                       zf-C2H2  2 kCpdCgksFsrksnLkrHir 21
                                  +C+ Cgk+F+++  L  H+r
  Zmw_sc02899.1.g00150.1.am.mk 25 PCTECGKRFPSWKALFGHMR 44
                                  5******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.6192451IPR007087Zinc finger, C2H2
SMARTSM003550.00342446IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.57E-92546No hitNo description
PfamPF139121.8E-92648IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.3E-42646IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS0002802646IPR007087Zinc finger, C2H2
SuperFamilySSF576671.57E-9126153No hitNo description
PfamPF139127.3E-12131155IPR007087Zinc finger, C2H2
PROSITE profilePS501579.39131153IPR007087Zinc finger, C2H2
SMARTSM003550.58131153IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280133153IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048235Biological Processpollen sperm cell differentiation
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
HPPPAADGAA SFARVRSSPN GDTPPCTECG KRFPSWKALF GHMRCHPERQ WRGITPPPHF  60
RVQGSTAADQ FTAQEREVAT SLLMLSGAGT GKKSLLGSPR GRKESAAGTS ASSSSTTAPA  120
AASSKCDADD HKCSVCHKGF ATGQALGGHK RCHWEGASGE AVVAATSSNC SVLATSQEAT  180
AATATALDLN LAPPGTPSPR TTNDQGRKLN AVLDLKLGY
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022682354.14e-78zinc finger protein ZAT3
TrEMBLA0A3L6PLI41e-79A0A3L6PLI4_PANMI; Zinc finger protein ZAT3-like
STRINGSi004657m1e-75(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP116122130