PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc02904.1.g00110.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family SBP
Protein Properties Length: 226aa    MW: 24748.3 Da    PI: 8.6679
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc02904.1.g00110.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP47.45e-151324778
                                    SSEEETTT--SS--S-STTTT-------S--- CS
                             SBP 47 srfhelsefDeekrsCrrrLakhnerrrkkqa 78
                                    srfh+lsefD++krsCrrrL++hn+rrrk+q+
  Zmw_sc02904.1.g00110.1.es.mkhc  1 SRFHALSEFDQKKRSCRRRLSDHNARRRKPQP 32
                                    8****************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5114114.905130IPR004333Transcription factor, SBP-box
PfamPF031104.0E-8129IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.61E-12135IPR004333Transcription factor, SBP-box
Gene3DG3DSA:4.10.1100.101.3E-4117IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
SRFHALSEFD QKKRSCRRRL SDHNARRRKP QPDAFAFASA RLPSSLFDDR RQISFVWNKA  60
PLSHVRPFTS PWDGSSDFKF PHTKEIREIS TKVGTTTGSD HYNSHLSNAI PTLSHGKDAL  120
LPTKGPDTSI TASKFDGAPD LQRALSLLSA GSCGFPDPVQ QASCLIQFSG TSENSGDLHS  180
SHGGSSALVS CADEQHIAPQ SQLVRFTLDA GGNDYDSTFF GLNQRN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11128KKRSCRRRLSDHNARRRK
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004951747.11e-137squamosa promoter-binding-like protein 4
RefseqXP_025805124.11e-137squamosa promoter-binding-like protein 4
SwissprotQ653Z52e-63SPL11_ORYSJ; Squamosa promoter-binding-like protein 11
TrEMBLA0A2T7F2J91e-136A0A2T7F2J9_9POAL; Uncharacterized protein
TrEMBLA0A3L6QEF91e-136A0A3L6QEF9_PANMI; Squamosa promoter-binding-like protein 4
STRINGSi017749m1e-136(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62712952