PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc02904.1.g00120.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

SBP

Protein Properties

Length: 140aa MW: 15135.1 Da PI: 8.4138

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc02904.1.g00120.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	79.4	5.3e-25	61	112	2	53
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETT CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhels 53 CqvegC dl+ akeyhr+h+vCe+h+k+p v+v+g+e+rfCqqCsr+ l Zmw_sc02904.1.g00120.1.am.mk 61 CQVEGCGLDLTGAKEYHRKHRVCEAHTKCPRVVVAGHERRFCQQCSRWVWLP 112 ***********************************************97765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	1.7E-24	54	108	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	19.136	58	135	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	6.8E-24	59	113	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	6.7E-19	61	108	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 140 aa Download sequence Send to blast
MEWTVPKPAA SPSSQPLLWD WGDSATPASG SSGEAPARRG GREREGKRAK GEDGGAGEVK 60 CQVEGCGLDL TGAKEYHRKH RVCEAHTKCP RVVVAGHERR FCQQCSRWVW LPDLLLSISR 120 MSSAVDLVDC RAASSRASCA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj0_A	6e-15	59	114	4	59	squamosa promoter-binding protein-like 12
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305\|PubMed:16861571}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004951747.1	4e-58	squamosa promoter-binding-like protein 4
Swissprot	Q6H509	1e-32	SPL4_ORYSJ; Squamosa promoter-binding-like protein 4
TrEMBL	A0A1E5WDC1	2e-59	A0A1E5WDC1_9POAL; Squamosa promoter-binding-like protein 11
STRING	Pavir.J20730.1.p	2e-58	(Panicum virgatum)
STRING	Si017749m	2e-57	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6271	29	52

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]