PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc02905.1.g00060.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

LBD

Protein Properties

Length: 293aa MW: 31270.7 Da PI: 8.7923

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc02905.1.g00060.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	55.5	1.6e-17	168	220	48	100
DUF260 48 alpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 ++p ++r da+sslvyeA+ar+rdPvyG+v+ i++lqqq+e+l+a+lal+++e Zmw_sc02905.1.g00060.1.am.mk 168 EIPVQHRGDAVSSLVYEANARVRDPVYGCVAAISSLQQQVETLQAQLALAQAE 220 578999*******************************************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03195	3.1E-15	167	218	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 293 aa Download sequence Send to blast
MLLSPCLMTH RVPPGPAITA GATKGGWMDR WVGVPAGRPP CSLSTRAWRG DTAAVVVPQK 60 LGNDAMTGVM MIFGASNVSK LLQVRAANSL LAGCFGYRLA CSDRDRASVF SSNLHADGAG 120 TNSPYVAHRL FPAGYVRKKL QVHHRAAAPA STDTPWCFSA NLACSTIEIP VQHRGDAVSS 180 LVYEANARVR DPVYGCVAAI SSLQQQVETL QAQLALAQAE MVRLNMNNAY MAHRLKKARS 240 CGGGGSSTNT GSPSSMSSPK MEQPEAPCKA TPELLDMVVD QPYSMDDSQL WSY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	4e-15	168	223	58	113	LOB family transfactor Ramosa2.1
5ly0_B	4e-15	168	223	58	113	LOB family transfactor Ramosa2.1
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Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002466719.1	2e-47	LOB domain-containing protein 4 isoform X1
TrEMBL	A0A3L6TSK8	3e-52	A0A3L6TSK8_PANMI; LOB domain-containing protein 4-like
STRING	Sb01g012810.1	7e-47	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP35252	3	4