PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc02908.1.g00130.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

NF-YB

Protein Properties

Length: 673aa MW: 73471 Da PI: 9.3297

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc02908.1.g00130.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	110.4	1.1e-34	124	213	6	95
NF-YB 6 rflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvy 86 ++lP+anv+r+m++v+P++ kis ak ++++c++ef++fv++ea++ + +e+r+ti+++d+ a+ lGf+dyv+pl++y Zmw_sc02908.1.g00130.1.am.mk 124 NELPMANVVRLMRQVIPTDVKISGRAKRLTHDCAVEFVAFVGGEAAECAAAEHRRTIAPEDFTRAFERLGFDDYVAPLSTY 204 579**************************************************************************** PP NF-YB 87 lkkyreleg 95 +++yre ++ Zmw_sc02908.1.g00130.1.am.mk 205 IRRYRENHQ 213 ***9776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	2.7E-26	125	214	IPR009072	Histone-fold
Pfam	PF00808	8.0E-14	125	186	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamily	SSF47113	3.26E-24	126	225	IPR009072	Histone-fold
Gene3D	G3DSA:1.10.20.10	1.3E-6	560	664	IPR009072	Histone-fold
SuperFamily	SSF47113	3.11E-6	562	661	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 673 aa Download sequence Send to blast
MRREEMMMRE CGMCCSITAV TAYNSTDFGG LTPKRFRRAS SNSLKCGLGF AAQSQLHVYP 60 KRSSSRPYTR RDSINSEEIP EEKLISHNSQ HKGAKGASRA NGSVRDGKRP APAAGSDDGD 120 GAGNELPMAN VVRLMRQVIP TDVKISGRAK RLTHDCAVEF VAFVGGEAAE CAAAEHRRTI 180 APEDFTRAFE RLGFDDYVAP LSTYIRRYRE NHQNGGIAPP RPSPAASSFT DEEVQFLMSV 240 VPEPLGGYDG AASSSKEAPP PDNYTMTKRM PISTHLQPEP PRRQGCLCCR ISAAIDDAPD 300 PAAAAHHPHP PPPPXXQLIH HNVTDRQLAL RIRSCRCKSS LPFACFARRF FCQIRGTANA 360 HGHHCSRLRA PGALVLRTAR APITYFSCQQ KGSFATKCHC TKGEHVGTGI YQGWPWCATV 420 LYMRTRGRPV RRSSSRAGLL SLRSEPLICD RDQGLQQAGT HGRRRAPGYV RHRSPLCPSL 480 GSVTLVTVTL KVHVAFCVSV CVVAGNSNVV DASLVDDGED GHCSAHLSVG ESSPDLVLPL 540 DALASTLLVP ESKCQVDVPT CAWETIDQCI TEAAARLAFE SANAAARGNR KVITPEDVNR 600 AIESLHQKDP DLGMVLKDMN VIVTRCNRAT AVRRRRERRL RKERAAAEKK AKKQEDLEAS 660 AAKEGLSGAR SRK

Sequence ? help Back to Top

Protein Sequence Length: 673 aa Download sequence Send to blast

MRREEMMMRE CGMCCSITAV TAYNSTDFGG LTPKRFRRAS SNSLKCGLGF AAQSQLHVYP  60
KRSSSRPYTR RDSINSEEIP EEKLISHNSQ HKGAKGASRA NGSVRDGKRP APAAGSDDGD  120
GAGNELPMAN VVRLMRQVIP TDVKISGRAK RLTHDCAVEF VAFVGGEAAE CAAAEHRRTI  180
APEDFTRAFE RLGFDDYVAP LSTYIRRYRE NHQNGGIAPP RPSPAASSFT DEEVQFLMSV  240
VPEPLGGYDG AASSSKEAPP PDNYTMTKRM PISTHLQPEP PRRQGCLCCR ISAAIDDAPD  300
PAAAAHHPHP PPPPXXQLIH HNVTDRQLAL RIRSCRCKSS LPFACFARRF FCQIRGTANA  360
HGHHCSRLRA PGALVLRTAR APITYFSCQQ KGSFATKCHC TKGEHVGTGI YQGWPWCATV  420
LYMRTRGRPV RRSSSRAGLL SLRSEPLICD RDQGLQQAGT HGRRRAPGYV RHRSPLCPSL  480
GSVTLVTVTL KVHVAFCVSV CVVAGNSNVV DASLVDDGED GHCSAHLSVG ESSPDLVLPL  540
DALASTLLVP ESKCQVDVPT CAWETIDQCI TEAAARLAFE SANAAARGNR KVITPEDVNR  600
AIESLHQKDP DLGMVLKDMN VIVTRCNRAT AVRRRRERRL RKERAAAEKK AKKQEDLEAS  660
AAKEGLSGAR SRK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_A	1e-21	126	210	13	97	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP13659	26	31