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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Zmw_sc02908.1.g00140.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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| Family | NF-YB | ||||||||
| Protein Properties | Length: 210aa MW: 22779.5 Da PI: 6.869 | ||||||||
| Description | NF-YB family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | NF-YB | 78.5 | 9.6e-25 | 75 | 165 | 5 | 95 |
NF-YB 5 drflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkv 85
d+ l + ++r+m+ vl a+ k+s ak++vq c+ efi v +ea+++c++++r+ ++++d+ +l +lG++ y+e + +
Zmw_sc02908.1.g00140.1.am.mk 75 DNQLSRSGIARMMRAVLDAQVKVSGPAKNLVQTCAKEFIVAVVDEATKQCHQNDRQMLTPEDVALSLRSLGLNSYIELMGT 155
67788889************************************************************************* PP
NF-YB 86 ylkkyreleg 95
yl++yre+ +
Zmw_sc02908.1.g00140.1.am.mk 156 YLRRYRETPR 165
******9865 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| Gene3D | G3DSA:1.10.20.10 | 1.5E-24 | 69 | 192 | IPR009072 | Histone-fold |
| SuperFamily | SSF47113 | 2.7E-20 | 75 | 174 | IPR009072 | Histone-fold |
| Pfam | PF00808 | 1.6E-10 | 81 | 140 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
| PRINTS | PR00615 | 8.9E-5 | 105 | 123 | No hit | No description |
| PRINTS | PR00615 | 8.9E-5 | 124 | 142 | No hit | No description |
| PRINTS | PR00615 | 8.9E-5 | 143 | 161 | No hit | No description |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0046982 | Molecular Function | protein heterodimerization activity | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 210 aa Download sequence Send to blast |
MVGVTASISR HGRGQRTDRR SCTLPWRHGI TRAQGRLSGK LPLCHARKPC HGADDHLGND 60 VLLLAAGGEE EEPSDNQLSR SGIARMMRAV LDAQVKVSGP AKNLVQTCAK EFIVAVVDEA 120 TKQCHQNDRQ MLTPEDVALS LRSLGLNSYI ELMGTYLRRY RETPRPRDGA RESDSTSAPA 180 PAAGDHSDEE LLQILDQAMD EAIGNGNGSS |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 1n1j_A | 4e-16 | 75 | 162 | 6 | 93 | NF-YB |
| 4awl_B | 5e-16 | 75 | 162 | 7 | 94 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA |
| 4csr_A | 5e-16 | 75 | 162 | 7 | 94 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA |
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Monocots | OGMP33077 | 3 | 3 |
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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