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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Zmw_sc02915.1.g00060.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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| Family | bHLH | ||||||||
| Protein Properties | Length: 278aa MW: 29030.9 Da PI: 6.2431 | ||||||||
| Description | bHLH family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | HLH | 44 | 4e-14 | 72 | 116 | 6 | 55 |
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
+ErrRR+r+N+ + Lr+++P+ +K++Ka+i + A+eYI +Lq
Zmw_sc02915.1.g00060.1.sm.mkhc 72 VVMERRRRRRLNDTLYALRSVVPNI-----TKMDKASIIKDAIEYILQLQ 116
579*********************7.....7******************9 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PROSITE profile | PS50888 | 15.897 | 66 | 115 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| SuperFamily | SSF47459 | 4.84E-18 | 71 | 138 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| SMART | SM00353 | 2.2E-15 | 72 | 121 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Pfam | PF00010 | 9.5E-12 | 72 | 116 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Gene3D | G3DSA:4.10.280.10 | 2.8E-16 | 72 | 131 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| CDD | cd00083 | 8.72E-6 | 82 | 113 | No hit | No description |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0046983 | Molecular Function | protein dimerization activity | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 278 aa Download sequence Send to blast |
MDSPTGDESL ACLWDCFDSE GLESLYIGDG GAGSGDGRHH EGYSSSPDVG SNHGSPSAAA 60 STGPGGGGSS NVVMERRRRR RLNDTLYALR SVVPNITKMD KASIIKDAIE YILQLQQLER 120 QLLAEISLLE SASAHPLLVG TPSSSISAAG MADSFCDGLA VSPTKKMRTA PCPGSTASPT 180 PPLPVDALEV RVSGAGDKVL VLSVACRHRR DAVAKVCRAL EGLRLRVIAA NVTSAAGTVT 240 HTALVQKELR QSEMKELVEA AIAQVDCVVG SPLSTMSY |
| Nucleic Localization Signal ? help Back to Top | |||
|---|---|---|---|
| No. | Start | End | Sequence |
| 1 | 74 | 81 | ERRRRRRL |
| 2 | 75 | 80 | RRRRRR |
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_004952451.2 | 1e-87 | transcription factor bHLH35 | ||||
| TrEMBL | C5Y131 | 9e-86 | C5Y131_SORBI; Uncharacterized protein | ||||
| STRING | Sb04g017390.1 | 2e-86 | (Sorghum bicolor) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Monocots | OGMP1044 | 38 | 133 |
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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