PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc02932.1.g00120.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

NF-YC

Protein Properties

Length: 253aa MW: 28087.9 Da PI: 4.671

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc02932.1.g00120.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	168.4	8.9e-53	82	186	1	102
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkk 76 ql+ fw++q +e++tdfknh lPlarikki+kadedv+misaeaPv+++kace+fileltlrsw+ +eenkrrt++k Zmw_sc02932.1.g00120.1.es.mkhc 82 QLREFWATQsdeVEQTTDFKNHILPLARIKKIMKADEDVRMISAEAPVVFAKACEVFILELTLRSWMLTEENKRRTMQK 160 89***999999************************************************************** PP NF-YC 77 sdiaaavtrtdifdflvdivprdelk 102 +diaaa+trtdi+dflvdi+prde+k Zmw_sc02932.1.g00120.1.es.mkhc 161 NDIAAAITRTDIYDFLVDIIPRDEMK 186 *********************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	9.05E-32	65	176	IPR009072	Histone-fold
Gene3D	G3DSA:1.10.20.10	1.0E-35	96	168	IPR009072	Histone-fold
Pfam	PF00808	1.2E-19	105	167	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005737	Cellular Component	cytoplasm
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 253 aa Download sequence Send to blast
MESSPQPQPV MGVTTGTQGY PAATAAYLPP AMVTVAPAGI PPGSQPTAPF PTNPAQLAGQ 60 HQLVYQQAQQ FHQQLQQQQQ QQLREFWATQ SDEVEQTTDF KNHILPLARI KKIMKADEDV 120 RMISAEAPVV FAKACEVFIL ELTLRSWMLT EENKRRTMQK NDIAAAITRT DIYDFLVDII 180 PRDEMKVEGL GLPRVGLPPA MGAPADSYPP YYYVPASQVP GAGMTYGAQQ GRPMTYVWPQ 240 QPQGQEEEPP EDH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_B	1e-55	89	182	2	95	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	154	160	RRTMQKN

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in the regulation of flowering time under long day (LD) conditions. Functions as repressor of flowering, independently of HD1 and GHD7. Controls flowering time by negatively regulating the expression of EHD1 and HD3A (PubMed:26542958). Component of the NF-Y/HAP transcription factor complex (By similarity). {ECO:0000250, ECO:0000269\|PubMed:26542958}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Circadian-regulation under long day (LD) conditions. Expression increases in the middle of daytime, peaks around the end of the light period and gradually decreases during the dark period and beginning of daylight. {ECO:0000269\|PubMed:26542958}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006646944.1	1e-118	PREDICTED: nuclear transcription factor Y subunit C-2
Refseq	XP_015689486.1	1e-118	PREDICTED: nuclear transcription factor Y subunit C-2
Swissprot	Q655V5	1e-109	NFYC4_ORYSJ; Nuclear transcription factor Y subunit C-4
TrEMBL	A0A0A9DBY3	1e-125	A0A0A9DBY3_ARUDO; Uncharacterized protein
STRING	Pavir.Aa03384.1.p	1e-123	(Panicum virgatum)
STRING	LPERR02G04650.1	1e-121	(Leersia perrieri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2703	37	90

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Kim SK, et al. OsNF-YC2 and OsNF-YC4 proteins inhibit flowering under long-day conditions in rice. Planta, 2016. 243(3): p. 563-76 [PMID:26542958]