PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc02959.1.g00050.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family FAR1
Protein Properties Length: 77aa    MW: 8640.91 Da    PI: 9.7077
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc02959.1.g00050.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR130.98.8e-101155147
                          FAR1  1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk 47
                                  +fY eY++++GF v+k++s++   +g  +++tfvC+k g ++ +   
  Zmw_sc02959.1.g00050.1.sm.mk 11 QFYLEYGYRAGFGVSKRTSHSV--DGVKYRATFVCYKGGIARIKPGL 55
                                  6****************99988..9999***********99877665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.7E-71155IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 77 aa     Download sequence    Send to blast
MTFETVDLAY QFYLEYGYRA GFGVSKRTSH SVDGVKYRAT FVCYKGGIAR IKPGLKARRR  60
LVAKTGSVEA ADECELH
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002446663.11e-39protein FAR1-RELATED SEQUENCE 6
TrEMBLC5YAF73e-38C5YAF7_SORBI; Uncharacterized protein
STRINGSb06g020040.15e-39(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967