PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc02977.1.g00050.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family WRKY
Protein Properties Length: 187aa    MW: 20574.2 Da    PI: 8.205
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc02977.1.g00050.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY102.32.8e-323490360
                                  -SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                          WRKY  3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60
                                  Dgy+WrKYGqK+vkgsefprsYY+Ct+++Cpvk+kve++  d+++ ei+Y+geHnh+k
  Zmw_sc02977.1.g00050.1.sm.mk 34 DGYSWRKYGQKKVKGSEFPRSYYKCTHPNCPVKRKVETTL-DGQIAEIVYSGEHNHPK 90
                                  9***************************************.***************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1182904.84E-253191IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.2E-273191IPR003657WRKY domain
SMARTSM007741.0E-343290IPR003657WRKY domain
PROSITE profilePS5081122.9053491IPR003657WRKY domain
PfamPF031062.8E-253489IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MEVDAEQPVP CNHLAKYQAV RKPLGGLKNC VSYDGYSWRK YGQKKVKGSE FPRSYYKCTH  60
PNCPVKRKVE TTLDGQIAEI VYSGEHNHPK PHSLMKPLSS TKTEVAVTNV CDNNSVEAES  120
LILDRNKAPG TAVTACGGSS DCVDKFEKLS EDADSNKSSD GRDGFKKQPD SLSKQCPIVS  180
TNLHQLI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A6e-1734911674WRKY transcription factor 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024311123.12e-49WRKY transcription factor 44
TrEMBLA0A0A9G2V53e-59A0A0A9G2V5_ARUDO; WRKY3
TrEMBLA0A0A9PMD83e-59A0A0A9PMD8_ARUDO; Uncharacterized protein
STRINGBRADI4G45290.19e-49(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23252941