PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc03012.1.g00110.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family HD-ZIP
Protein Properties Length: 261aa    MW: 28930.7 Da    PI: 10.0408
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc03012.1.g00110.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.25.8e-1881133355
                                   --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
                      Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                                   k+ +++keq + Lee F+ n++++ +++e LA kl+L  rqV vWFqNrRa++
  Zmw_sc03012.1.g00110.1.am.mk  81 KKLRLSKEQSRLLEESFRLNHTLTPKQKEALAVKLKLRPRQVEVWFQNRRARK 133
                                   67789**********************************************97 PP
2HD-ZIP_I/II77.81.8e-2581134255
                   HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtk 55 
                                   kk+rlskeq++lLEesF+ +++L+p++K++la +L+l+prqv+vWFqnrRAR +
  Zmw_sc03012.1.g00110.1.am.mk  81 KKLRLSKEQSRLLEESFRLNHTLTPKQKEALAVKLKLRPRQVEVWFQNRRARKH 134
                                   9***************************************************75 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.6E-1860135IPR009057Homeodomain-like
SuperFamilySSF466894.71E-1872136IPR009057Homeodomain-like
PROSITE profilePS5007117.02276136IPR001356Homeobox domain
SMARTSM003892.9E-1478140IPR001356Homeobox domain
CDDcd000861.08E-1379136No hitNo description
PfamPF000463.7E-1581133IPR001356Homeobox domain
PfamPF021833.9E-10168201IPR003106Leucine zipper, homeobox-associated
SMARTSM003407.1E-23168211IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MGATSPSAPS GLELTMAVPG LSSSSGSEGF AGCNNNSNGG TGNSHVRMDL DMNQPASGGE  60
EEMGSVEEDE EERGGGPHRP KKLRLSKEQS RLLEESFRLN HTLTPKQKEA LAVKLKLRPR  120
QVEVWFQNRR ARKHREDEAI ENVTDRAPSF PCEAIGHRSS RRRRTKLKQT EMECEYLKRC  180
FGSLTEENRR LQREVEELRA MRVAPPTVLS PHTRQPLPAS ALTMCPRCER ITAATGPPAA  240
RTARSPPAAS LFHPRRPSAA F
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1160168RRRRTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription repressor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}.
UniProtProbable transcription repressor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015645561.11e-114homeobox-leucine zipper protein HOX3 isoform X1
SwissprotQ0JKX11e-115HOX3_ORYSJ; Homeobox-leucine zipper protein HOX3
SwissprotQ9XH381e-115HOX3_ORYSI; Homeobox-leucine zipper protein HOX3
TrEMBLA0A2T7DJ801e-120A0A2T7DJ80_9POAL; Uncharacterized protein
STRINGORUFI01G27220.11e-113(Oryza rufipogon)
STRINGOS01T0643600-001e-113(Oryza sativa)
STRINGONIVA01G27550.11e-113(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP68263549