PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc03022.1.g00050.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 664aa MW: 70044.5 Da PI: 8.668

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc03022.1.g00050.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	17.6	7.2e-06	568	608	9	54
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r RR+r+ +++ L++l+P K++ a++L +A Y+k L Zmw_sc03022.1.g00050.1.am.mk 568 ARLRRERVSERLRVLQKLVPGG-----SKMDTASMLDEAASYLKFL 608 599***************95.....5**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	5.05E-10	550	613	No hit	No description
PROSITE profile	PS50888	14.449	559	608	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	7.6E-12	565	614	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.31E-12	565	618	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.9E-9	568	617	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 664 aa Download sequence Send to blast
MWREGLGERI IAPTPVLAAG DQLTTQCLSL VELKLAAKAT PVVGHRVESE LPAPDWVLAA 60 PSKSATLSWS SPAAGRCRGA AGCCTGNRSN RVDPRARGSL TGHGDLGVQC SDHDVRGKLG 120 ESDGRSTAPI MCSSLSVALS AGRFLPVLLV IAALPPAVRF NVLTYQLRSI DRSRAGAWTE 180 AGAVKDRAND ATRRRRCSQV AATNRLLTKA SKGSRAPERS CRSRRSESEQ RKTRPFPSAE 240 ILSSHRLLDP SLSLTYELGR SELNLRSPSA RLNFNLCASR LIGFPSLGGG GAGMDATYGW 300 AGAGQHVDDY FSRQVGCARF EMDDAFLGAC FGQQQCDGIS GAGGNAGTCQ VSSDFGGTGG 360 CPAGVDSDPL AIMSPGTGDV FDASLLDAAL AFSRELGDVC GAVSNGAMFS SYSGTTGGNM 420 SSGESNNYSG GSHDAEVVSP TTAPPPSFPH ASSEQALHPK RKVTDEYPSI ITPTTEPPPA 480 MPFPRPGGGK RRAATTSISF GRDPGGPQDP GARYEPDMEA MAQVKEMIYR AAAMRPVILG 540 PEVVAEAAAE KPRRKNVRIS SDPQTVAARL RRERVSERLR VLQKLVPGGS KMDTASMLDE 600 AASYLKFLKS QVQALETLGT TTTTNSSSTS RPSQQHYSYH NSSNPGFLGF ARSSNISHGG 660 YDVD

Sequence ? help Back to Top

Protein Sequence Length: 664 aa Download sequence Send to blast

MWREGLGERI IAPTPVLAAG DQLTTQCLSL VELKLAAKAT PVVGHRVESE LPAPDWVLAA  60
PSKSATLSWS SPAAGRCRGA AGCCTGNRSN RVDPRARGSL TGHGDLGVQC SDHDVRGKLG  120
ESDGRSTAPI MCSSLSVALS AGRFLPVLLV IAALPPAVRF NVLTYQLRSI DRSRAGAWTE  180
AGAVKDRAND ATRRRRCSQV AATNRLLTKA SKGSRAPERS CRSRRSESEQ RKTRPFPSAE  240
ILSSHRLLDP SLSLTYELGR SELNLRSPSA RLNFNLCASR LIGFPSLGGG GAGMDATYGW  300
AGAGQHVDDY FSRQVGCARF EMDDAFLGAC FGQQQCDGIS GAGGNAGTCQ VSSDFGGTGG  360
CPAGVDSDPL AIMSPGTGDV FDASLLDAAL AFSRELGDVC GAVSNGAMFS SYSGTTGGNM  420
SSGESNNYSG GSHDAEVVSP TTAPPPSFPH ASSEQALHPK RKVTDEYPSI ITPTTEPPPA  480
MPFPRPGGGK RRAATTSISF GRDPGGPQDP GARYEPDMEA MAQVKEMIYR AAAMRPVILG  540
PEVVAEAAAE KPRRKNVRIS SDPQTVAARL RRERVSERLR VLQKLVPGGS KMDTASMLDE  600
AASYLKFLKS QVQALETLGT TTTTNSSSTS RPSQQHYSYH NSSNPGFLGF ARSSNISHGG  660
YDVD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	549	555	EKPRRKN
2	550	555	KPRRKN
3	568	573	RLRRER

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025818336.1	1e-163	transcription factor LATE FLOWERING-like
TrEMBL	A0A2T7DHT3	1e-162	A0A2T7DHT3_9POAL; Uncharacterized protein
STRING	Pavir.Eb02901.1.p	1e-154	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1546	37	106