PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc03022.1.g00130.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 312aa    MW: 34397 Da    PI: 11.2635
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc03022.1.g00130.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.21.5e-13168214455
                                   HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                           HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                                   +h e+Er+RR+++N++f  Lr ++Pk +      K++Ka+ L  A+ YI++L+
  Zmw_sc03022.1.g00130.1.am.mk 168 NHVEAERQRREKLNQRFYALRAVVPKiS------KMDKASLLSDAIAYIRELE 214
                                   799***********************66......****************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088817.06164213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-16167217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.25E-12167218No hitNo description
SuperFamilySSF474599.95E-17167221IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.8E-11168214IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-15170219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MDTPSRDTSE IFSGSIRARA KAARQSKPRA VHRACFTIKF VRRKTKRADA EDTRRRTPGA  60
WTSRALNGGS YDASLPAPTL FIAARRMSIK TEPDAACMAR RRSGSRDDAN SSRPRQVDFV  120
PVIIHPPPYK KRERQNATEE QNMQAGVEER KPRKRGRKPA NGREEPLNHV EAERQRREKL  180
NQRFYALRAV VPKISKMDKA SLLSDAIAYI RELEDRLRGA PAESPPAVEV KTTSLDEVAL  240
RVTTALHAHP ASRVFRAVRD AELGVVSSDL AVADDAVTHT LVLRSTGPER LTAEAVLAAL  300
SRGTGGGGTP SP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A2e-27162242278Transcription factor MYC2
5gnj_B2e-27162242278Transcription factor MYC2
5gnj_E2e-27162242278Transcription factor MYC2
5gnj_F2e-27162242278Transcription factor MYC2
5gnj_G2e-27162242278Transcription factor MYC2
5gnj_I2e-27162242278Transcription factor MYC2
5gnj_M2e-27162242278Transcription factor MYC2
5gnj_N2e-27162242278Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1149157RKPRKRGRK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that negatively regulates jasmonate (JA) signaling (PubMed:30610166). Negatively regulates JA-dependent response to wounding, JA-induced expression of defense genes, JA-dependent responses against herbivorous insects, and JA-dependent resistance against Botrytis cinerea infection (PubMed:30610166). Plays a positive role in resistance against the bacterial pathogen Pseudomonas syringae pv tomato DC3000 (PubMed:30610166). {ECO:0000269|PubMed:30610166}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding, feeding with herbivorous insects, infection with the fungal pathogen Botrytis cinerea and infection with the bacterial pathogen Pseudomonas syringae pv tomato DC3000. {ECO:0000269|PubMed:30610166}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
SwissprotA0A3Q7ELQ22e-52MTB1_SOLLC; Transcription factor MTB1
TrEMBLA0A0E0N1E68e-69A0A0E0N1E6_ORYRU; Uncharacterized protein
STRINGPavir.J39604.1.p1e-70(Panicum virgatum)
STRINGORUFI01G31210.11e-69(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP73852944
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Sun H,Fan HJ,Ling HQ
    Genome-wide identification and characterization of the bHLH gene family in tomato.
    BMC Genomics, 2015. 16: p. 9
    [PMID:25612924]
  3. Liu Y, et al.
    MYC2 Regulates the Termination of Jasmonate Signaling via an Autoregulatory Negative Feedback Loop.
    Plant Cell, 2019. 31(1): p. 106-127
    [PMID:30610166]