PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc03043.1.g00100.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

LBD

Protein Properties

Length: 313aa MW: 33250.1 Da PI: 7.675

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc03043.1.g00100.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	95	8.4e-30	4	107	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGa 76 +C++C+vlr++C+++C ++p++ p++q++++ +++k++G++ +l+l++a+pe+ r+ +++sl+yeA+ r+ +P+yG+ Zmw_sc03043.1.g00100.1.sm.mk 4 SCNGCRVLRKGCSDSCSIRPCLqwiktPDAQSNATVFLAKFYGRAGLLNLVNAAPENLRPSVFRSLLYEACGRIVNPIYGS 84 6****************************************************************************** PP DUF260 77 vgvilklqqqleqlkaelallke 99 vg++++ ++ ++q+++e++l ++ Zmw_sc03043.1.g00100.1.sm.mk 85 VGLLWSCNWSMCQAAVEAVLKGA 107 ***************998766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	16.7	3	109	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	6.9E-24	4	102	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 313 aa Download sequence Send to blast
MRLSCNGCRV LRKGCSDSCS IRPCLQWIKT PDAQSNATVF LAKFYGRAGL LNLVNAAPEN 60 LRPSVFRSLL YEACGRIVNP IYGSVGLLWS CNWSMCQAAV EAVLKGAPIV QISSAEAAAA 120 DTTSSPAHVS SLHKAAYDIR HVASSSSSKK QPLCASPPQT KAPDADKPVR LNLKKRTSDS 180 SSAAATCSNK KRKQQQQPAS LQHQQDSAVS DDHQHDSAVS DQQKHGHMAV ESSNSDDDAQ 240 AAGSHVSQAE HNEKEVEEEQ QQNQLGLDLT LGLTPVPAPC VPHRPAPTAG DAGCSLAGTG 300 TGWSASEPAF RFL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	173	192	KKRTSDSSSAAATCSNKKRK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024310953.1	9e-83	LOB domain-containing protein 42-like
TrEMBL	A0A0A9PIQ8	4e-91	A0A0A9PIQ8_ARUDO; Uncharacterized protein
STRING	MLOC_58304.1	2e-84	(Hordeum vulgare)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1235	37	127