PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc03049.1.g00010.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

C2H2

Protein Properties

Length: 95aa MW: 10683.3 Da PI: 8.758

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc03049.1.g00010.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.9	0.00067	22	44	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ykC+ Cg + s ks+ + H H Zmw_sc03049.1.g00010.1.sm.mkhc 22 YKCEFCGVVRSKKSLIRAHVLEH 44 9**************99999985 PP
2	zf-C2H2	27.3	8.8e-09	68	89	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C++Cgk+F+ + +Lk+H+++H Zmw_sc03049.1.g00010.1.sm.mkhc 68 ECEKCGKRFKKPAHLKQHMQSH 89 6*******************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	2.58E-9	20	89	No hit	No description
SMART	SM00355	9.4	22	44	IPR015880	Zinc finger, C2H2-like
SMART	SM00355	0.0016	67	89	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	12.424	67	94	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	4.0E-7	68	91	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
Pfam	PF00096	4.0E-6	68	89	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	69	89	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 95 aa Download sequence Send to blast
MAGTTVATAG TTPAPVRDVR RYKCEFCGVV RSKKSLIRAH VLEHHKDEVD GVEAYQGCDV 60 PSKELIQECE KCGKRFKKPA HLKQHMQSHS LETTY

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025805294.1	1e-33	transcription factor IIIA-like
Refseq	XP_025805295.1	1e-33	transcription factor IIIA-like
TrEMBL	A0A2S3H7J2	3e-32	A0A2S3H7J2_9POAL; Uncharacterized protein
STRING	BRADI2G37790.1	8e-32	(Brachypodium distachyon)
STRING	Pavir.Ca00708.1.p	7e-32	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP17974	8	10