PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc03049.1.g00070.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family WOX
Protein Properties Length: 332aa    MW: 35966.2 Da    PI: 6.8267
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc03049.1.g00070.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox642.1e-2079138357
                                   --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                      Homeobox   3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                                   +R+++t+eql +Lee+++   r+p+a+++++++++l    +++ ++V++WFqN++a++++
  Zmw_sc03049.1.g00070.1.am.mk  79 TRWCPTPEQLMVLEEMYRGgMRTPTASQIQQITAHLadygRIEGKNVFYWFQNHKARDRQ 138
                                   8*****************99*************************************996 PP
2Wus_type_Homeobox118.82.4e-3878139364
             Wus_type_Homeobox   3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 
                                   +tRW+PtpeQ+++Lee+y+ G+rtP++++iq+ita+L+ yG+ie+kNVfyWFQN+kaR+rqk
  Zmw_sc03049.1.g00070.1.am.mk  78 STRWCPTPEQLMVLEEMYRGGMRTPTASQIQQITAHLADYGRIEGKNVFYWFQNHKARDRQK 139
                                   79***********************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003893.0E-476143IPR001356Homeobox domain
SuperFamilySSF466897.45E-1177142IPR009057Homeodomain-like
PfamPF000464.7E-1879138IPR001356Homeobox domain
CDDcd000862.74E-579139No hitNo description
Gene3DG3DSA:1.10.10.602.7E-780138IPR009057Homeodomain-like
PROSITE profilePS5007110.10684139IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MVDDPFCLSA QLHSTNQEPQ TNQLTAHHPR QLQADRSLSI ISSYALYVAR VYSREEEDDF  60
MPSQQGGQQQ RQVPTMGSTR WCPTPEQLMV LEEMYRGGMR TPTASQIQQI TAHLADYGRI  120
EGKNVFYWFQ NHKARDRQKL RRRLCMSHHR HLLTCSAQYY AATATHHHHG HGFPATMPVA  180
PAYGCGGGGV FDQPAGAAGV QLLAPTSPSP AAAAAYGYYY PAATTFAAAP TVRCAGDGGT  240
TPPSPNQLFN YHQDGGGVAL APVEALGRPE HSLGKLADNF GVSTTLDDGV EIGPPGFEGS  300
LPSPLTTALC RPLKTLDLFP GGLKEEQQHD VA
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025809937.13e-86putative WUSCHEL-related homeobox 2
TrEMBLA0A1E5VXX16e-96A0A1E5VXX1_9POAL; Putative WUSCHEL-related homeobox 2
STRINGPavir.J22602.1.p8e-89(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21773897