PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc03067.1.g00010.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family AP2
Protein Properties Length: 361aa    MW: 38990.2 Da    PI: 9.2536
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc03067.1.g00010.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP222.92.1e-072849122
                             AP2  1 sgykGVrwdkkrgrWvAeIrdp 22
                                    s+y+GV++++++grW+++I+ +
  Zmw_sc03067.1.g00010.1.am.mkhc 28 SQYRGVTFYRRTGRWESHIWAY 49
                                    78*****************984 PP
2AP246.87.2e-15101151155
                             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                     s+y+GV+ +k  grW+A+   +     +k+++lg f+t+eeAa+a+++a+ k +g
  Zmw_sc03067.1.g00010.1.am.mkhc 101 SKYRGVTLHK-CGRWEARMGQF--L-GKKYVYLGLFDTEEEAARAYDRAAIKCNG 151
                                     89********.7******5553..2.26**********************99776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.55E-52867IPR016177DNA-binding domain
SMARTSM003805.6E-72972IPR001471AP2/ERF domain
SuperFamilySSF541712.35E-18101159IPR016177DNA-binding domain
PfamPF008477.3E-11101151IPR001471AP2/ERF domain
CDDcd000181.24E-25101159No hitNo description
SMARTSM003801.9E-33102165IPR001471AP2/ERF domain
PROSITE profilePS5103216.489102159IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.1E-17102159IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
PTAGNVAPAV AAAAASKKSR RGPRSRSSQY RGVTFYRRTG RWESHIWAYD RAAIKFRGVE  60
ADINFSLEDY QDDMKQMGNL SKEEFVHVLR RQSTGFPRGS SKYRGVTLHK CGRWEARMGQ  120
FLGKKYVYLG LFDTEEEAAR AYDRAAIKCN GKDAVTNFDP IMYAEELEQS SVFAGACDAA  180
ATGGDEHNLN LSLGSSAGSK RGSLDGGGDG DEESSDHRVL MAFDLDWQTA AARSTKAKQF  240
EQSSKQAQMP PALQASQHLS FNPRHHHQFL SGGDPGTSDG LSLMIGGAGG GGGHCPPPLQ  300
QPQRLPRGWG NTTTWPPYPP SPSTGAAATA TAAAASSRFP PYVTTQQAPS WTGFHSLTRP  360
T
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor (PubMed:22408071). Involved in spikelet transition and development (PubMed:22408071). Prevents lemma and palea elongation as well as grain growth (PubMed:22408071). Required for seed shattering through specifying abscission zone (AZ) development (PubMed:22408071). {ECO:0000269|PubMed:22408071}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025824499.11e-151AP2-like ethylene-responsive transcription factor TOE3 isoform X2
SwissprotB8AVJ91e-141APL25_ORYSI; APETALA2-like protein 5
TrEMBLA0A1E5VX801e-159A0A1E5VX80_9POAL; Floral homeotic protein APETALA 2
STRINGSi012635m1e-147(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP55143658
Publications ? help Back to Top
  1. Zhou Y, et al.
    Genetic control of seed shattering in rice by the APETALA2 transcription factor shattering abortion1.
    Plant Cell, 2012. 24(3): p. 1034-48
    [PMID:22408071]