PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc03075.1.g00010.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family AP2
Protein Properties Length: 890aa    MW: 95247.2 Da    PI: 9.3129
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc03075.1.g00010.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP237.84.6e-12472528155
                           AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                   s+y+GV++++++gr++A+++d  + ++  ++ k  + g ++ +e+Aa+a++ a++k++g
  Zmw_sc03075.1.g00010.1.am.mk 472 SQYRGVTRHRWTGRYEAHLWDnSC-RKegQTrKGRQ-GGYDMEEKAARAYDLAALKYWG 528
                                   78*******************433.44555535555.77******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.47E-16472535No hitNo description
PfamPF008471.5E-9472528IPR001471AP2/ERF domain
SuperFamilySSF541711.44E-13472537IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.4E-11473536IPR001471AP2/ERF domain
SMARTSM003807.2E-21473542IPR001471AP2/ERF domain
PROSITE profilePS5103216.937473536IPR001471AP2/ERF domain
SMARTSM003801.7E-4560703IPR001471AP2/ERF domain
PROSITE profilePS510329.717626697IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.0E-6670697IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 890 aa     Download sequence    Send to blast
MHDAVAVCSR ALRIWCLSLR VLHKVHLGAC LLYRSRREQL MRGFFFERSR FSVAASREKI  60
ERKGPELQSV RYDRHHPSKP HATFFPAHRS RPRLLRSRPP ATRAHSAYLS PHLARSDTDR  120
SRPSPFKDAQ LLYPGRVPDH CAVSSAMIDL SSSLLPTTSA TTSSSSGPAG GPRPRYEMTS  180
NSSQNVSTCS TGGRDAAAAG GSWLGFSLSP HHMVASMDAA AGGADNGVQQ HYGGGLYYPP  240
VTSSPAPFCY ALGSGQESVV TQAAGANGGG FYPGLSSMPL RSDGSLCITE ALRSGEEEQH  300
HGVVASLAPP KLEDFLGTGP AMAMSLNNST GLYYGGDHGH SACLQPLQCA MIPGATAHDV  360
YGHASMVDEQ SAAAIAASWF AARGVGGYDV NSTGVDAALV PAAACHPLAL SMSSGSGSQT  420
SCVTMQMSAH ADPVAEYIAM EGSKKRGSTD RGAGQKQTVH RKSVDTFGQR TSQYRGVTRH  480
RWTGRYEAHL WDNSCRKEGQ TRKGRQGGYD MEEKAARAYD LAALKYWGPS THINFSLEDY  540
REELEEMKKM TRQEYVAHLR RHHQHGRWQA RIGRVSGNKD LYLGTFTLAP PQRMFALPIL  600
AHFFAALLRV RRRRVPAPVR VSVLVTFRKA GSPQSAGSFA CSIDRSRLAR LTPTAVKDRC  660
DCRSVVVACV STQDEAAEAY DVAAIKFRGL NAVTNFDITR YDVEKIMESS TLLPSELVRR  720
RKDGDAGTAA AAITAGDDTA VANAAAALVH AGSTALDWKI QAAAAALPAP ARTDERAEQN  780
HELLASEVYS AFSAQHVIVS VDANNAHGNA GAHVSNASSL STSVNNSREQ SADRGGGLAV  840
LFAKPVVSAA SKLSCPPLPL GSWVSPSPVS ARPAMSIAHL PMFAAWTDAA
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025796942.10.0AP2-like ethylene-responsive transcription factor CRL5
TrEMBLA0A1D6L6650.0A0A1D6L665_MAIZE; AP2-like ethylene-responsive transcription factor ANT
STRINGPavir.J24038.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP94838133