PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc03085.1.g00040.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family HD-ZIP
Protein Properties Length: 254aa    MW: 28312.5 Da    PI: 5.3699
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc03085.1.g00040.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.61.2e-1955108456
                                   -SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                      Homeobox   4 RttftkeqleeLeelFek.nrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                                   +++ft+eq++ Le++F+  + ++  +e++eLA+ lgL+ rqV +WFqN+Ra+++
  Zmw_sc03085.1.g00040.1.am.mk  55 KRRFTEEQIRSLESMFHAhHAKLEPREKAELARDLGLQPRQVAIWFQNKRARWR 108
                                   458**************9899********************************9 PP
2HD-ZIP_I/II125.42.6e-4053146193
                   HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeee.kLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerL 80 
                                   e+krr+++eq+++LE++F++++ kLep++K+elar+Lglqprqva+WFqn+RAR+++kqlE+dy+aLk++ydal++  e+L
  Zmw_sc03085.1.g00040.1.am.mk  53 ERKRRFTEEQIRSLESMFHAHHaKLEPREKAELARDLGLQPRQVAIWFQNKRARWRSKQLEHDYAALKSKYDALHACVESL 133
                                   69******************999********************************************************** PP

                   HD-ZIP_I/II  81 ekeveeLreelke 93 
                                   ++e+ +L+++l+e
  Zmw_sc03085.1.g00040.1.am.mk 134 KQEKLALTAQLHE 146
                                   *********9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.83E-1841112IPR009057Homeodomain-like
PROSITE profilePS5007117.49149110IPR001356Homeobox domain
SMARTSM003892.0E-1952114IPR001356Homeobox domain
CDDcd000862.67E-1754111No hitNo description
PfamPF000464.6E-1755108IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.8E-1955117IPR009057Homeodomain-like
PRINTSPR000311.2E-68190IPR000047Helix-turn-helix motif
PROSITE patternPS00027085108IPR017970Homeobox, conserved site
PRINTSPR000311.2E-690106IPR000047Helix-turn-helix motif
PfamPF021833.5E-14110151IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MDLSDHHQHQ FFVPPQPQPQ QLCVQTMMDA EQSFLVGRGG GAGGGVAAGM RGERKRRFTE  60
EQIRSLESMF HAHHAKLEPR EKAELARDLG LQPRQVAIWF QNKRARWRSK QLEHDYAALK  120
SKYDALHACV ESLKQEKLAL TAQLHELNER LREREDRARS SAGVAATASS SSCNGGGEEE  180
VEDDKRNVLA GCVDMEPPES CVLGGPCATP ADVSVGSEYD DHHVDYDHGF PESFCAATPE  240
LWEPWPLVEW NAVA
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: In leaves by drought stress. {ECO:0000269|PubMed:17999151}.
UniProtINDUCTION: In leaves by drought stress. {ECO:0000269|PubMed:17999151}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004976404.11e-121homeobox-leucine zipper protein HOX22
SwissprotQ01IK02e-96HOX22_ORYSI; Homeobox-leucine zipper protein HOX22
SwissprotQ7XUJ52e-96HOX22_ORYSJ; Homeobox-leucine zipper protein HOX22
TrEMBLA0A368RX291e-120A0A368RX29_SETIT; Uncharacterized protein
STRINGSi010550m1e-118(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP40273175