PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc03085.1.g00120.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

Trihelix

Protein Properties

Length: 1005aa MW: 108306 Da PI: 8.8201

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc03085.1.g00120.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	97	1.7e-30	370	454	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpy 81 rW+++e+laLi++r+em+ ++r++ lk+plWe+vs+k+++ g++rs+k+Ckek+en++k+yk++keg+ +r++++s +++ Zmw_sc03085.1.g00120.1.am.mk 370 RWPREETLALIRIRSEMDATFRDATLKGPLWEDVSRKLADLGYKRSAKKCKEKFENVHKYYKRTKEGRAGRQDGKS--YRF 448 8*******************************************************************866665..* PP trihelix 82 fdqlea 87 f++lea Zmw_sc03085.1.g00120.1.am.mk 449 FSELEA 454 ***985 PP
2	trihelix	109.3	2.4e-34	748	833	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpy 81 rW+k ev+aLi++r +m+ r++++ k+plWe++s+ mr+ g++rs+k+Ckekwen+nk+ykk+ke++kkr +e+s+tcpy Zmw_sc03085.1.g00120.1.am.mk 748 RWPKAEVHALIQLRMDMDMRYQETGPKGPLWEDISAGMRRLGYNRSSKRCKEKWENINKYYKKVKESNKKR-PEDSKTCPY 827 8*******************************************************************8.99*** PP trihelix 82 fdqlea 87 f+qlea Zmw_sc03085.1.g00120.1.am.mk 828 FHQLEA 833 **85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	3.3E-4	367	429	IPR001005	SANT/Myb domain
PROSITE profile	PS50090	7.039	369	427	IPR017877	Myb-like domain
CDD	cd12203	8.99E-31	369	434	No hit	No description
Pfam	PF13837	2.3E-21	369	455	No hit	No description
SMART	SM00717	0.0011	745	807	IPR001005	SANT/Myb domain
CDD	cd12203	2.59E-31	747	812	No hit	No description
Pfam	PF13837	1.6E-23	747	834	No hit	No description
PROSITE profile	PS50090	7.189	747	805	IPR017877	Myb-like domain

Sequence ? help Back to Top
Protein Sequence Length: 1005 aa Download sequence Send to blast
MGEIDRWIDG RQRQRHAGRG GTAAAPHAMH AARDCVSRLQ RGRRRCQRGP VVRARAPHLG 60 AAQGYVSVSR RVQSIHPKDP SIYPQPPRFI NFPYLSTTSP GYKTGAASAV TDSSGVDRRV 120 ALSLTLSLGQ APSHYHQVTS GARAVFACFF LPSSLALDPF HFHSSPFSLS PRPHHTHSVC 180 PWEGEEEGAG HRAARLELPL LSYNSVLRLL LAAFLPSLYS SSYKYAGTQG ATRPAIQGLA 240 FGCGCYPHAA SSSKNRRVAA AGKEKLKFNR EEGELVAAPM QHQPQHQGSE SPYGAAPPSM 300 GPFSPPAASS AMPLSSRPPS SSQEQQQLTP SYEELTAVSE AGAGASFPDD EMLGGGSGGG 360 GGSGTPGGNR WPREETLALI RIRSEMDATF RDATLKGPLW EDVSRKLADL GYKRSAKKCK 420 EKFENVHKYY KRTKEGRAGR QDGKSYRFFS ELEALHAAAP QPPACSAPQM HAFAAPVSAA 480 PPMNPLPPPA AGGPMQPAPI SSAAPAPFEL PPPQPLNLQG LSFSSMSDSE SDGESDDDDM 540 TAETGGGQEQ LGKRKRGGGG KKMMSFFEGL MQQVVERQEE VQRRFLETME KREAERTARE 600 EAWRRQEVAR LNREQDQLAQ ERAAAASRDA TIIAFLQRIG GHSVQPPAAV IVPMSAHMTV 660 QTPPPPPKQP PRQQPTQATP PPKPISASPL QQQPPQQQYK ETSPQNISTP RGAPPTPGSA 720 ASLELVPTSE QHVDLALGGE GGAASSSRWP KAEVHALIQL RMDMDMRYQE TGPKGPLWED 780 ISAGMRRLGY NRSSKRCKEK WENINKYYKK VKESNKKRPE DSKTCPYFHQ LEAIYLKKQQ 840 SGGTAASSAN VVAAATTPAF TSQLNQSRQE IEGKNINDDK RNNGGSSGGG AQVPPSNGDP 900 APPLTAALDV DSGTKKPEDI VRELTERPPR GVMTDETDSD DMGDEYTDDG EEGEDDGKMQ 960 YRIQFQSPNS GGNNSAPAPA PSTTTTPPGP ASAPTTTNTF AAMVQ

Sequence ? help Back to Top

Protein Sequence Length: 1005 aa Download sequence Send to blast

MGEIDRWIDG RQRQRHAGRG GTAAAPHAMH AARDCVSRLQ RGRRRCQRGP VVRARAPHLG  60
AAQGYVSVSR RVQSIHPKDP SIYPQPPRFI NFPYLSTTSP GYKTGAASAV TDSSGVDRRV  120
ALSLTLSLGQ APSHYHQVTS GARAVFACFF LPSSLALDPF HFHSSPFSLS PRPHHTHSVC  180
PWEGEEEGAG HRAARLELPL LSYNSVLRLL LAAFLPSLYS SSYKYAGTQG ATRPAIQGLA  240
FGCGCYPHAA SSSKNRRVAA AGKEKLKFNR EEGELVAAPM QHQPQHQGSE SPYGAAPPSM  300
GPFSPPAASS AMPLSSRPPS SSQEQQQLTP SYEELTAVSE AGAGASFPDD EMLGGGSGGG  360
GGSGTPGGNR WPREETLALI RIRSEMDATF RDATLKGPLW EDVSRKLADL GYKRSAKKCK  420
EKFENVHKYY KRTKEGRAGR QDGKSYRFFS ELEALHAAAP QPPACSAPQM HAFAAPVSAA  480
PPMNPLPPPA AGGPMQPAPI SSAAPAPFEL PPPQPLNLQG LSFSSMSDSE SDGESDDDDM  540
TAETGGGQEQ LGKRKRGGGG KKMMSFFEGL MQQVVERQEE VQRRFLETME KREAERTARE  600
EAWRRQEVAR LNREQDQLAQ ERAAAASRDA TIIAFLQRIG GHSVQPPAAV IVPMSAHMTV  660
QTPPPPPKQP PRQQPTQATP PPKPISASPL QQQPPQQQYK ETSPQNISTP RGAPPTPGSA  720
ASLELVPTSE QHVDLALGGE GGAASSSRWP KAEVHALIQL RMDMDMRYQE TGPKGPLWED  780
ISAGMRRLGY NRSSKRCKEK WENINKYYKK VKESNKKRPE DSKTCPYFHQ LEAIYLKKQQ  840
SGGTAASSAN VVAAATTPAF TSQLNQSRQE IEGKNINDDK RNNGGSSGGG AQVPPSNGDP  900
APPLTAALDV DSGTKKPEDI VRELTERPPR GVMTDETDSD DMGDEYTDDG EEGEDDGKMQ  960
YRIQFQSPNS GGNNSAPAPA PSTTTTPPGP ASAPTTTNTF AAMVQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	412	420	KRSAKKCKE

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001344790.1	0.0	uncharacterized LOC100279868 isoform 2
TrEMBL	A0A1D6E4F1	0.0	A0A1D6E4F1_MAIZE; GT-2-like 1
STRING	GRMZM2G016649_P03	0.0	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP606	38	175