PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc03090.1.g00080.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

M-type_MADS

Protein Properties

Length: 397aa MW: 43593.1 Da PI: 11.3646

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc03090.1.g00080.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	23	1e-07	10	49	3	42
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42 i+ k+++ tf +Rr+ ++ A+ LS LC + vav++ ++ Zmw_sc03090.1.g00080.1.am.mk 10 ISRKTRQASTFQRRRADLFMEASSLSNLCHVPVAVMVHAP 49 8999*******************************99875 PP
2	SRF-TF	53.3	3.4e-17	339	381	2	44
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44 rien++ rq + kRr+++l KA+EL vLCd+ vav+++s+ Zmw_sc03090.1.g00080.1.am.mk 339 RIENERSRQAALRKRRATLLQKAKELAVLCDVAVAVVVYSNGE 381 8***************************************865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	0.1	1	60	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	9.867	8	46	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	8.11E-8	9	73	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	2.7E-7	10	49	IPR002100	Transcription factor, MADS-box
SMART	SM00432	2.8E-22	330	389	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.83E-18	330	390	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	19.736	330	379	IPR002100	Transcription factor, MADS-box
CDD	cd00120	1.47E-21	331	389	No hit	No description
PRINTS	PR00404	5.5E-13	332	352	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.1E-16	339	382	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	5.5E-13	352	367	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	5.5E-13	367	388	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 397 aa Download sequence Send to blast
MGQVKLGRVI SRKTRQASTF QRRRADLFME ASSLSNLCHV PVAVMVHAPG EATEPAIWPP 60 AESASILLQR YKIFLLRQRT EKLSRLLRVV KLANRAHEVS LVLADLLAGH HQVLDGVPVD 120 LAVDVRAVLR LRLKVVSGAI GSRSATVDVA DDGEIRRGSG LLEKTAAVMA EESGGAQPTD 180 AELERFLGEL LLLKWPVVLT VLTPNLANLD RFRPTLPPRC RRSRAPERQV PAGRSLHRHG 240 LKPKNKARTR RPLLISIKGA PFSIDLLKPS KKKKNNLQHG QKVGYCRGDA VPDTFPSGLA 300 SPAIKHGLLL RPPPTNHQNL LDGVPKVPAM TRGKVKILRI ENERSRQAAL RKRRATLLQK 360 AKELAVLCDV AVAVVVYSNG EPVPETFPSA AQTKEIL

Sequence ? help Back to Top

Protein Sequence Length: 397 aa Download sequence Send to blast

MGQVKLGRVI SRKTRQASTF QRRRADLFME ASSLSNLCHV PVAVMVHAPG EATEPAIWPP  60
AESASILLQR YKIFLLRQRT EKLSRLLRVV KLANRAHEVS LVLADLLAGH HQVLDGVPVD  120
LAVDVRAVLR LRLKVVSGAI GSRSATVDVA DDGEIRRGSG LLEKTAAVMA EESGGAQPTD  180
AELERFLGEL LLLKWPVVLT VLTPNLANLD RFRPTLPPRC RRSRAPERQV PAGRSLHRHG  240
LKPKNKARTR RPLLISIKGA PFSIDLLKPS KKKKNNLQHG QKVGYCRGDA VPDTFPSGLA  300
SPAIKHGLLL RPPPTNHQNL LDGVPKVPAM TRGKVKILRI ENERSRQAAL RKRRATLLQK  360
AKELAVLCDV AVAVVVYSNG EPVPETFPSA AQTKEIL

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP24440	4	5