PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc03099.1.g00040.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

MYB_related

Protein Properties

Length: 326aa MW: 35448 Da PI: 9.2213

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc03099.1.g00040.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	33.4	1.1e-10	5	45	3	44
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 +W+t E e++ +a + +G++ W+++a+ +g g+t +++ ++ Zmw_sc03099.1.g00040.1.am.mk 5 SWSTSENERFERALATYGSD-WERVASAVGGGKTVDDVRRHY 45 7*****************.******************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51293	14.197	1	53	IPR017884	SANT domain
SMART	SM00717	2.2E-7	2	51	IPR001005	SANT/Myb domain
Pfam	PF00249	6.5E-9	4	45	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	6.08E-11	5	53	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	3.9E-5	5	46	IPR009057	Homeodomain-like
CDD	cd00167	6.17E-6	5	45	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 326 aa Download sequence Send to blast
MADMSWSTSE NERFERALAT YGSDWERVAS AVGGGKTVDD VRRHYALLVK DVGEIESGDY 60 GYPNSSAGNG NRNNRYAHVH APLYLAICSD DQAPEFHVLF VYACMFQVLA EAKPTGRKLD 120 GKPSEHVRRQ GWVACSLGVR PRPPGGHRSL VHSSSPQDKA MVASLFVGGT WRCFSSKATM 180 ASRWLQQAYR VYVPPLCFRC AGAQPASQRR PPPEGEPTPQ NSSSPVAGWA SVVFSTRPAL 240 YYSHIGASLV TASNPSPSPF PPANRAYRDP FVKPSRRISA RPPFAGCSTH RFCSGGGGDP 300 SGPWIAFFTF AGKEALAALL FCEIFP

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP27949	3	4